SMTL ID : 4yan.2 (1 other biounit)

Crystal structure of LigE in complex with glutathione (GSH) from Sphingobium sp. strain SYK-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 15 residues within 4Å: Chain A: L.12, S.21, P.22, Y.23, R.26, F.45, I.48, R.58, V.59, P.60, D.71, S.72, W.73, Y.133, R.138 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.23, A:R.58 Hydrogen bonds: A:R.58, A:V.59, A:D.71, A:D.71, A:S.72, A:S.72, A:Y.133, A:R.138 Water bridges: A:R.26 Salt bridges: A:R.26, A:R.58 GSH.2: 17 residues within 4Å: Chain B: L.12, S.21, P.22, Y.23, R.26, F.45, I.48, E.57, R.58, V.59, P.60, D.71, S.72, W.73, Y.133, R.138, W.141 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.23, B:R.58 Hydrogen bonds: B:F.45, B:V.59, B:D.71, B:D.71, B:S.72, B:S.72, B:Y.133, B:R.138 Water bridges: B:R.26 Salt bridges: B:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helmich, K.E. et al., Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of beta-Aryl Ether Bonds in Lignin. J.Biol.Chem. (2016)

Release Date

2015-12-16

Peptides

Beta-etherase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Beta-etherase

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