SMTL ID : 4ycg.1

Pro-bone morphogenetic protein 9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: E.92, N.113, S.115 Chain C: M.90 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain B: N.113, S.115 No protein-ligand interaction detected (PLIP)

10 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: H.141, E.212 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.141, A:E.212, A:E.212 ZN.4: 3 residues within 4Å: Chain A: H.119, E.120, E.244 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.119, A:E.120, A:E.244, A:E.244, H2O.1 ZN.5: 1 residues within 4Å: Chain A: D.173 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.173, A:D.173, H2O.1 ZN.6: 1 residues within 4Å: Chain A: E.101 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.101 ZN.7: 2 residues within 4Å: Chain A: E.144, H.210 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.144, A:E.144, A:H.210 ZN.8: 2 residues within 4Å: Chain B: D.136, D.215 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.136, B:D.136, B:D.215, B:D.215 ZN.9: 1 residues within 4Å: Chain B: D.173 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.173, B:D.173, H2O.1 ZN.10: 3 residues within 4Å: Chain B: H.119, E.120, E.244 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.119, B:E.120, B:E.244, B:E.244 ZN.11: 2 residues within 4Å: Chain C: H.98, E.100 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.100 ZN.12: 1 residues within 4Å: Chain C: H.62 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.62, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mi, L.Z. et al., Structure of bone morphogenetic protein 9 procomplex. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-03-04

Peptides

Bone Morphogenetic Protein 9 Growth Factor Domain: AB
Bone Morphogenetic Protein 9 Prodomain: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Bone Morphogenetic Protein 9 Growth Factor Domain

Bone Morphogenetic Protein 9 Prodomain

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