- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-2-mer
- Ligands
- 4 x KRS: cladosporin(Non-covalent)
- 4 x LYS: LYSINE(Non-covalent)
LYS.2: 15 residues within 4Å:- Chain A: G.209, A.210, A.231, E.233, R.255, E.271, Y.273, N.429, A.430, Y.431, E.433, G.478, W.479, G.480
- Ligands: KRS.1
13 PLIP interactions:12 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.431
- Hydrogen bonds: A:G.209, A:E.233, A:E.271, A:E.271, A:Y.273, A:N.429, A:E.433, K.2
- Water bridges: A:R.255, A:R.255, A:R.255
- Salt bridges: A:R.255
LYS.6: 15 residues within 4Å:- Chain B: G.209, A.210, A.231, E.233, R.255, E.271, Y.273, N.429, A.430, Y.431, E.433, G.478, W.479, G.480
- Ligands: KRS.5
9 PLIP interactions:9 interactions with chain B,- Hydrophobic interactions: B:Y.431
- Hydrogen bonds: B:G.209, B:E.271, B:N.429, B:E.433
- Water bridges: B:R.255, B:R.255, B:R.255
- Salt bridges: B:R.255
LYS.10: 15 residues within 4Å:- Chain D: G.209, A.210, A.231, E.233, R.255, E.271, Y.273, N.429, A.430, Y.431, E.433, G.478, W.479, G.480
- Ligands: KRS.9
11 PLIP interactions:10 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: D:Y.431
- Hydrogen bonds: D:G.209, D:E.271, D:N.429, D:E.433, K.10
- Water bridges: D:R.255, D:R.255, D:R.255, D:Y.431
- Salt bridges: D:R.255
LYS.14: 15 residues within 4Å:- Chain E: G.209, A.210, A.231, E.233, R.255, E.271, Y.273, N.429, A.430, Y.431, E.433, G.478, W.479, G.480
- Ligands: KRS.13
11 PLIP interactions:11 interactions with chain E,- Hydrophobic interactions: E:Y.431
- Hydrogen bonds: E:G.209, E:E.233, E:Y.273, E:N.429, E:E.433
- Water bridges: E:R.255, E:R.255, E:R.255, E:Y.431
- Salt bridges: E:R.255
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: R.63, H.65, R.80, G.81, E.82, G.83, I.167, R.173
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.63, A:G.81, A:G.83, A:R.173
GOL.4: 3 residues within 4Å:- Chain A: D.377, E.385, E.419
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.385, A:E.419
GOL.7: 6 residues within 4Å:- Chain B: Y.279, M.283, R.325, N.327, C.395, D.396
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.327, B:D.396
- Water bridges: B:K.411
GOL.8: 5 residues within 4Å:- Chain B: D.377, E.385, E.419, F.421, E.426
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.385, B:E.426
- Water bridges: B:E.385
GOL.11: 8 residues within 4Å:- Chain D: R.63, H.65, R.80, G.81, E.82, G.83, I.167, R.173
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.63, D:G.81, D:G.83, D:R.173
GOL.12: 3 residues within 4Å:- Chain D: D.377, E.385, E.419
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:E.385, D:E.419
- Water bridges: D:D.377, D:E.385, D:E.385
GOL.15: 6 residues within 4Å:- Chain E: Y.279, M.283, R.325, N.327, C.395, D.396
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Y.279, E:N.327, E:D.396
- Water bridges: E:K.411
GOL.16: 5 residues within 4Å:- Chain E: D.377, E.385, E.419, F.421, E.426
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:E.385, E:E.426
- Water bridges: E:E.419
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fang, P. et al., Structural Basis for Specific Inhibition of tRNA Synthetase by an ATP Competitive Inhibitor. Chem. Biol. (2015)
- Release Date
- 2015-06-10
- Peptides
- Lysine--tRNA ligase: ABDE
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
AE
BC
CF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-2-mer
- Ligands
- 4 x KRS: cladosporin(Non-covalent)
- 4 x LYS: LYSINE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fang, P. et al., Structural Basis for Specific Inhibition of tRNA Synthetase by an ATP Competitive Inhibitor. Chem. Biol. (2015)
- Release Date
- 2015-06-10
- Peptides
- Lysine--tRNA ligase: ABDE
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
AE
BC
CF
C