SMTL ID : 4yd9.1

Crystal structure of squid hemocyanin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-10-10-10-mer

Ligands

29 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: T.313, N.387, T.389, M.391 Chain Z: K.138 1 PLIP interactions: 1 interactions with chain Z Hydrogen bonds: Z:K.138 NAG-NAG.2: 4 residues within 4Å: Chain A: T.740, D.804, N.806, L.810 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain B: N.472 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 7 residues within 4Å: Chain D: T.313, N.387, T.389, M.391 Chain K: T.136, A.137, K.138 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:K.138 NAG-NAG.9: 6 residues within 4Å: Chain D: A.1564, S.1565, A.1634, V.1635, N.1636, K.1639 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain E: F.403, S.405, N.472, T.474, L.480 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:F.403 NAG-NAG.11: 5 residues within 4Å: Chain B: K.138 Chain G: A.385, N.387, T.389, M.391 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 5 residues within 4Å: Chain G: T.740, D.804, N.806, T.808, L.810 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:L.810 NAG-NAG.13: 7 residues within 4Å: Chain G: A.1298, Q.1299, P.1301, V.1308, R.1494, N.1498, T.1500 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 3 residues within 4Å: Chain H: S.405, N.472, T.474 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 4 residues within 4Å: Chain J: T.313, N.387, T.389 Chain Q: K.138 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 5 residues within 4Å: Chain J: T.740, D.804, N.806, T.808, L.810 No protein-ligand interaction detected (PLIP) NAG-NAG.18: 7 residues within 4Å: Chain J: A.1298, Q.1299, P.1301, V.1308, R.1494, N.1498, T.1500 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 2 residues within 4Å: Chain K: S.405, N.472 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 6 residues within 4Å: Chain M: I.1562, A.1564, S.1565, A.1634, V.1635, N.1636 No protein-ligand interaction detected (PLIP) NAG-NAG.25: 4 residues within 4Å: Chain N: S.405, N.472, L.476, L.480 1 PLIP interactions: 1 interactions with chain N Hydrophobic interactions: N:L.480 NAG-NAG.27: 6 residues within 4Å: Chain P: T.740, D.804, N.806, T.808, A.809, L.810 1 PLIP interactions: 1 interactions with chain P Hydrophobic interactions: P:T.808 NAG-NAG.29: 6 residues within 4Å: Chain P: K.1563, N.1636, S.1638, K.1639, T.1641, I.1644 3 PLIP interactions: 3 interactions with chain P Hydrophobic interactions: P:T.1641, P:I.1644 Hydrogen bonds: P:K.1563 NAG-NAG.30: 2 residues within 4Å: Chain Q: S.405, N.472 No protein-ligand interaction detected (PLIP) NAG-NAG.31: 6 residues within 4Å: Chain N: K.138 Chain S: I.311, T.313, N.387, T.389, M.391 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:K.138 NAG-NAG.32: 4 residues within 4Å: Chain S: D.804, N.806, T.808, L.810 No protein-ligand interaction detected (PLIP) NAG-NAG.34: 3 residues within 4Å: Chain S: A.1564, N.1636, K.1639 No protein-ligand interaction detected (PLIP) NAG-NAG.40: 6 residues within 4Å: Chain W: S.405, A.470, N.472, T.474, L.476, L.480 2 PLIP interactions: 2 interactions with chain W Hydrophobic interactions: W:L.476, W:L.480 NAG-NAG.41: 5 residues within 4Å: Chain T: K.138 Chain Y: T.313, N.387, T.389, M.391 1 PLIP interactions: 1 interactions with chain T Hydrogen bonds: T:K.138 NAG-NAG.42: 4 residues within 4Å: Chain Y: D.804, N.806, T.808, L.810 No protein-ligand interaction detected (PLIP) NAG-NAG.45: 5 residues within 4Å: Chain Z: G.404, S.405, N.472, L.476, L.480 2 PLIP interactions: 2 interactions with chain Z Hydrophobic interactions: Z:L.476, Z:L.480 NAG-NAG.47: 4 residues within 4Å: Chain 1: D.804, N.806, T.808, L.810 1 PLIP interactions: 1 interactions with chain 1 Hydrophobic interactions: 1:L.810 NAG-NAG.49: 6 residues within 4Å: Chain 1: A.1564, S.1565, A.1634, V.1635, N.1636, K.1639 No protein-ligand interaction detected (PLIP) NAG-NAG.50: 3 residues within 4Å: Chain 2: S.405, N.472, L.480 1 PLIP interactions: 1 interactions with chain 2 Hydrophobic interactions: 2:L.480

6 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 8 residues within 4Å: Chain A: A.1298, Q.1299, C.1300, P.1301, V.1308, R.1494, N.1498, T.1500 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.8: 6 residues within 4Å: Chain D: A.1298, Q.1299, P.1301, R.1494, N.1498, T.1500 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.33: 8 residues within 4Å: Chain S: A.1298, Q.1299, P.1301, V.1308, R.1494, N.1498, T.1500, A.1501 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.38: 6 residues within 4Å: Chain V: A.1298, Q.1299, P.1301, R.1494, N.1498, T.1500 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.43: 7 residues within 4Å: Chain Y: Q.1299, P.1301, V.1308, R.1494, N.1498, T.1500, A.1501 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.48: 7 residues within 4Å: Chain 1: A.1298, Q.1299, P.1301, R.1494, N.1498, T.1500, A.1501 No protein-ligand interaction detected (PLIP)

13 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.4: 7 residues within 4Å: Chain A: K.1563, A.1564, A.1634, N.1636, S.1638, T.1641, I.1644 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.1641, A:I.1644 NAG-NAG-BMA.7: 4 residues within 4Å: Chain D: D.804, N.806, T.808, L.810 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.14: 6 residues within 4Å: Chain G: A.1564, V.1635, N.1636, K.1639, T.1641, I.1644 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:T.1641, G:I.1644 NAG-NAG-BMA.19: 7 residues within 4Å: Chain J: K.1563, A.1564, S.1565, V.1635, N.1636, K.1639, T.1641 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:T.1641 NAG-NAG-BMA.21: 6 residues within 4Å: Chain H: K.138 Chain M: I.311, T.313, N.387, T.389, M.391 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:K.138 NAG-NAG-BMA.26: 3 residues within 4Å: Chain P: T.313, N.387 Chain W: K.138 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.28: 8 residues within 4Å: Chain P: A.1298, Q.1299, P.1301, V.1308, R.1494, N.1498, T.1500, A.1501 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.35: 5 residues within 4Å: Chain T: G.404, S.405, N.472, L.476, L.480 2 PLIP interactions: 2 interactions with chain T Hydrophobic interactions: T:L.476, T:L.480 NAG-NAG-BMA.36: 8 residues within 4Å: Chain 2: T.136, A.137, K.138 Chain V: I.311, T.313, N.387, T.389, M.391 2 PLIP interactions: 1 interactions with chain V, 1 interactions with chain 2 Hydrophobic interactions: V:T.313 Hydrogen bonds: 2:K.138 NAG-NAG-BMA.37: 5 residues within 4Å: Chain V: T.740, D.804, N.806, T.808, L.810 1 PLIP interactions: 1 interactions with chain V Hydrophobic interactions: V:L.810 NAG-NAG-BMA.39: 5 residues within 4Å: Chain V: K.1563, A.1564, N.1636, K.1639, T.1641 1 PLIP interactions: 1 interactions with chain V Hydrophobic interactions: V:T.1641 NAG-NAG-BMA.44: 7 residues within 4Å: Chain Y: K.1563, A.1564, N.1636, S.1638, K.1639, T.1641, I.1644 2 PLIP interactions: 2 interactions with chain Y Hydrophobic interactions: Y:T.1641, Y:I.1644 NAG-NAG-BMA.46: 8 residues within 4Å: Chain 1: I.311, T.313, N.387, T.389, M.391 Chain E: T.136, A.137, K.138 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.138

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.22: 4 residues within 4Å: Chain M: D.804, N.806, T.808, L.810 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.23: 8 residues within 4Å: Chain M: A.1298, Q.1299, P.1301, V.1308, R.1494, N.1498, T.1500, A.1501 No protein-ligand interaction detected (PLIP)

80 x CUO: CU2-O2 CLUSTER(Non-covalent)(Covalent)(Non-functional Binders)

CUO.51: 8 residues within 4Å: Chain A: H.41, C.58, H.60, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.60 Metal complexes: A:H.41, A:H.60, A:H.69, A:H.179, A:H.183, A:H.210 CUO.52: 9 residues within 4Å: Chain A: H.462, C.480, H.482, F.487, H.491, H.603, H.607, H.634, L.763 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.482 Metal complexes: A:H.462, A:H.482, A:H.491, A:H.603, A:H.607, A:H.634 CUO.53: 8 residues within 4Å: Chain A: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:H.877, A:H.897, A:H.906, A:H.1015, A:H.1019, A:H.1046 CUO.54: 9 residues within 4Å: Chain A: H.1294, C.1312, H.1314, F.1319, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.1314 Metal complexes: A:H.1294, A:H.1314, A:H.1323, A:H.1427, A:H.1431, A:H.1458 CUO.55: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.56: 10 residues within 4Å: Chain B: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.146 Metal complexes: B:H.126, B:H.146, B:H.155, B:H.267, B:H.271, B:H.298 CUO.57: 9 residues within 4Å: Chain B: H.543, C.559, H.561, F.566, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.561 Metal complexes: B:H.543, B:H.561, B:H.570, B:H.680, B:H.684, B:H.711 CUO.58: 8 residues within 4Å: Chain L: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 7 PLIP interactions: 7 interactions with chain L Hydrogen bonds: L:H.60, L:H.169 Metal complexes: L:H.41, L:H.60, L:H.69, L:H.169, L:H.200 CUO.59: 8 residues within 4Å: Chain C: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:H.60, C:H.169 Metal complexes: C:H.41, C:H.60, C:H.69, C:H.169, C:H.200 CUO.60: 8 residues within 4Å: Chain D: H.41, H.60, F.65, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:H.60 Metal complexes: D:H.41, D:H.60, D:H.69, D:H.179, D:H.183, D:H.210 CUO.61: 8 residues within 4Å: Chain D: H.462, H.482, H.491, H.603, H.607, F.630, H.634, L.763 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:H.482 Metal complexes: D:H.462, D:H.482, D:H.491, D:H.603, D:H.607, D:H.634 CUO.62: 8 residues within 4Å: Chain D: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:H.897 Metal complexes: D:H.877, D:H.897, D:H.906, D:H.1015, D:H.1019, D:H.1046 CUO.63: 8 residues within 4Å: Chain D: H.1294, C.1312, H.1314, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:H.1314 Metal complexes: D:H.1294, D:H.1314, D:H.1323, D:H.1427, D:H.1431, D:H.1458 CUO.64: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.65: 10 residues within 4Å: Chain E: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 6 PLIP interactions: 6 interactions with chain E Metal complexes: E:H.126, E:H.146, E:H.155, E:H.267, E:H.271, E:H.298 CUO.66: 9 residues within 4Å: Chain E: H.543, C.559, H.561, F.566, H.570, H.680, H.684, F.707, H.711 6 PLIP interactions: 6 interactions with chain E Metal complexes: E:H.543, E:H.561, E:H.570, E:H.680, E:H.684, E:H.711 CUO.67: 8 residues within 4Å: Chain 0: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 7 PLIP interactions: 7 interactions with chain 0 Hydrogen bonds: 0:H.60, 0:H.169 Metal complexes: 0:H.41, 0:H.60, 0:H.69, 0:H.169, 0:H.200 CUO.68: 8 residues within 4Å: Chain F: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:H.41, F:H.60, F:H.69, F:H.169, F:H.200 CUO.69: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.70: 8 residues within 4Å: Chain G: H.41, C.58, H.60, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain G Hydrogen bonds: G:H.60 Metal complexes: G:H.41, G:H.60, G:H.69, G:H.179, G:H.183, G:H.210 CUO.71: 9 residues within 4Å: Chain G: H.462, C.480, H.482, H.491, H.603, H.607, F.630, H.634, L.763 7 PLIP interactions: 7 interactions with chain G Hydrogen bonds: G:H.482 Metal complexes: G:H.462, G:H.482, G:H.491, G:H.603, G:H.607, G:H.634 CUO.72: 8 residues within 4Å: Chain G: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046 6 PLIP interactions: 6 interactions with chain G Metal complexes: G:H.877, G:H.897, G:H.906, G:H.1015, G:H.1019, G:H.1046 CUO.73: 9 residues within 4Å: Chain G: H.1294, C.1312, H.1314, F.1319, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain G Hydrogen bonds: G:H.1314 Metal complexes: G:H.1294, G:H.1314, G:H.1323, G:H.1427, G:H.1431, G:H.1458 CUO.74: 10 residues within 4Å: Chain H: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:H.146 Metal complexes: H:H.126, H:H.146, H:H.155, H:H.267, H:H.271, H:H.298 CUO.75: 9 residues within 4Å: Chain H: H.543, C.559, H.561, F.566, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:H.561 Metal complexes: H:H.543, H:H.561, H:H.570, H:H.680, H:H.684, H:H.711 CUO.76: 8 residues within 4Å: Chain R: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 7 PLIP interactions: 7 interactions with chain R Hydrogen bonds: R:H.60, R:H.169 Metal complexes: R:H.41, R:H.60, R:H.69, R:H.169, R:H.200 CUO.77: 8 residues within 4Å: Chain I: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 6 PLIP interactions: 6 interactions with chain I Hydrogen bonds: I:H.169 Metal complexes: I:H.41, I:H.60, I:H.69, I:H.169, I:H.200 CUO.78: 9 residues within 4Å: Chain J: H.41, C.58, H.60, F.65, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:H.60 Metal complexes: J:H.41, J:H.60, J:H.69, J:H.179, J:H.183, J:H.210 CUO.79: 10 residues within 4Å: Chain J: H.462, C.480, H.482, H.491, H.603, H.607, F.630, H.633, H.634, L.763 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:H.482 Metal complexes: J:H.462, J:H.482, J:H.491, J:H.603, J:H.607, J:H.634 CUO.80: 9 residues within 4Å: Chain J: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046, L.1178 6 PLIP interactions: 6 interactions with chain J Metal complexes: J:H.877, J:H.897, J:H.906, J:H.1015, J:H.1019, J:H.1046 CUO.81: 10 residues within 4Å: Chain J: H.1294, C.1312, H.1314, F.1319, H.1323, H.1427, H.1431, F.1454, H.1458, L.1593 7 PLIP interactions: 7 interactions with chain J Hydrogen bonds: J:H.1314 Metal complexes: J:H.1294, J:H.1314, J:H.1323, J:H.1427, J:H.1431, J:H.1458 CUO.82: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.83: 10 residues within 4Å: Chain K: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain K Hydrogen bonds: K:H.146 Metal complexes: K:H.126, K:H.146, K:H.155, K:H.267, K:H.271, K:H.298 CUO.84: 9 residues within 4Å: Chain K: H.543, C.559, H.561, F.566, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain K Hydrogen bonds: K:H.561 Metal complexes: K:H.543, K:H.561, K:H.570, K:H.680, K:H.684, K:H.711 CUO.85: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.86: 9 residues within 4Å: Chain M: H.41, C.58, H.60, F.65, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain M Hydrogen bonds: M:H.60 Metal complexes: M:H.41, M:H.60, M:H.69, M:H.179, M:H.183, M:H.210 CUO.87: 9 residues within 4Å: Chain M: H.462, C.480, H.482, F.487, H.491, H.603, H.607, H.634, L.763 7 PLIP interactions: 7 interactions with chain M Hydrogen bonds: M:H.482 Metal complexes: M:H.462, M:H.482, M:H.491, M:H.603, M:H.607, M:H.634 CUO.88: 9 residues within 4Å: Chain M: H.877, C.895, H.897, F.902, H.906, H.1015, H.1019, F.1042, H.1046 6 PLIP interactions: 6 interactions with chain M Metal complexes: M:H.877, M:H.897, M:H.906, M:H.1015, M:H.1019, M:H.1046 CUO.89: 8 residues within 4Å: Chain M: H.1294, C.1312, H.1314, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain M Hydrogen bonds: M:H.1314 Metal complexes: M:H.1294, M:H.1314, M:H.1323, M:H.1427, M:H.1431, M:H.1458 CUO.90: 9 residues within 4Å: Chain N: H.126, C.144, H.146, H.155, H.267, H.271, F.294, H.298, L.429 6 PLIP interactions: 6 interactions with chain N Metal complexes: N:H.126, N:H.146, N:H.155, N:H.267, N:H.271, N:H.298 CUO.91: 9 residues within 4Å: Chain N: H.543, C.559, H.561, F.566, H.570, H.680, H.684, F.707, H.711 6 PLIP interactions: 6 interactions with chain N Metal complexes: N:H.543, N:H.561, N:H.570, N:H.680, N:H.684, N:H.711 CUO.92: 8 residues within 4Å: Chain O: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 6 PLIP interactions: 6 interactions with chain O Hydrogen bonds: O:H.60 Metal complexes: O:H.41, O:H.60, O:H.69, O:H.169, O:H.200 CUO.93: 9 residues within 4Å: Chain P: H.41, C.58, H.60, F.65, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain P Hydrogen bonds: P:H.60 Metal complexes: P:H.41, P:H.60, P:H.69, P:H.179, P:H.183, P:H.210 CUO.94: 9 residues within 4Å: Chain P: H.462, C.480, H.482, H.491, H.603, H.607, F.630, H.634, L.763 6 PLIP interactions: 6 interactions with chain P Metal complexes: P:H.462, P:H.482, P:H.491, P:H.603, P:H.607, P:H.634 CUO.95: 8 residues within 4Å: Chain P: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046 7 PLIP interactions: 7 interactions with chain P Hydrogen bonds: P:H.897 Metal complexes: P:H.877, P:H.897, P:H.906, P:H.1015, P:H.1019, P:H.1046 CUO.96: 8 residues within 4Å: Chain P: H.1294, C.1312, H.1314, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain P Hydrogen bonds: P:H.1314 Metal complexes: P:H.1294, P:H.1314, P:H.1323, P:H.1427, P:H.1431, P:H.1458 CUO.97: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.98: 10 residues within 4Å: Chain Q: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain Q Hydrogen bonds: Q:H.146 Metal complexes: Q:H.126, Q:H.146, Q:H.155, Q:H.267, Q:H.271, Q:H.298 CUO.99: 9 residues within 4Å: Chain Q: H.543, C.559, H.561, F.566, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain Q Hydrogen bonds: Q:H.561 Metal complexes: Q:H.543, Q:H.561, Q:H.570, Q:H.680, Q:H.684, Q:H.711 CUO.100: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.101: 10 residues within 4Å: Chain S: H.41, C.58, H.60, F.65, H.69, H.179, H.183, F.206, H.210, L.344 6 PLIP interactions: 6 interactions with chain S Metal complexes: S:H.41, S:H.60, S:H.69, S:H.179, S:H.183, S:H.210 CUO.102: 10 residues within 4Å: Chain S: H.462, C.480, H.482, F.487, H.491, H.603, H.607, F.630, H.634, L.763 7 PLIP interactions: 7 interactions with chain S Hydrogen bonds: S:H.482 Metal complexes: S:H.462, S:H.482, S:H.491, S:H.603, S:H.607, S:H.634 CUO.103: 7 residues within 4Å: Chain S: H.877, H.897, H.906, H.1015, H.1019, F.1042, H.1046 7 PLIP interactions: 7 interactions with chain S Hydrogen bonds: S:H.897 Metal complexes: S:H.877, S:H.897, S:H.906, S:H.1015, S:H.1019, S:H.1046 CUO.104: 9 residues within 4Å: Chain S: H.1294, C.1312, H.1314, F.1319, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain S Hydrogen bonds: S:H.1314 Metal complexes: S:H.1294, S:H.1314, S:H.1323, S:H.1427, S:H.1431, S:H.1458 CUO.105: 9 residues within 4Å: Chain T: H.126, C.144, H.146, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain T Hydrogen bonds: T:H.146 Metal complexes: T:H.126, T:H.146, T:H.155, T:H.267, T:H.271, T:H.298 CUO.106: 8 residues within 4Å: Chain T: H.543, C.559, H.561, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain T Hydrogen bonds: T:H.561 Metal complexes: T:H.543, T:H.561, T:H.570, T:H.680, T:H.684, T:H.711 CUO.107: 8 residues within 4Å: Chain U: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 7 PLIP interactions: 7 interactions with chain U Hydrogen bonds: U:H.60, U:H.169 Metal complexes: U:H.41, U:H.60, U:H.69, U:H.169, U:H.200 CUO.108: 9 residues within 4Å: Chain V: H.41, C.58, H.60, F.65, H.69, H.179, H.183, F.206, H.210 7 PLIP interactions: 7 interactions with chain V Hydrogen bonds: V:H.60 Metal complexes: V:H.41, V:H.60, V:H.69, V:H.179, V:H.183, V:H.210 CUO.109: 10 residues within 4Å: Chain V: H.462, C.480, H.482, F.487, H.491, H.603, H.607, F.630, H.634, L.763 7 PLIP interactions: 7 interactions with chain V Hydrogen bonds: V:H.482 Metal complexes: V:H.462, V:H.482, V:H.491, V:H.603, V:H.607, V:H.634 CUO.110: 9 residues within 4Å: Chain V: H.877, C.895, H.897, F.902, H.906, H.1015, H.1019, F.1042, H.1046 6 PLIP interactions: 6 interactions with chain V Metal complexes: V:H.877, V:H.897, V:H.906, V:H.1015, V:H.1019, V:H.1046 CUO.111: 8 residues within 4Å: Chain V: H.1294, C.1312, H.1314, H.1323, H.1427, H.1431, F.1454, H.1458 6 PLIP interactions: 6 interactions with chain V Metal complexes: V:H.1294, V:H.1314, V:H.1323, V:H.1427, V:H.1431, V:H.1458 CUO.112: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.113: 10 residues within 4Å: Chain W: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain W Hydrogen bonds: W:H.146 Metal complexes: W:H.126, W:H.146, W:H.155, W:H.267, W:H.271, W:H.298 CUO.114: 8 residues within 4Å: Chain W: H.543, C.559, H.561, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain W Hydrogen bonds: W:H.561 Metal complexes: W:H.543, W:H.561, W:H.570, W:H.680, W:H.684, W:H.711 CUO.115: 8 residues within 4Å: Chain X: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 7 PLIP interactions: 7 interactions with chain X Hydrogen bonds: X:H.60, X:H.169 Metal complexes: X:H.41, X:H.60, X:H.69, X:H.169, X:H.200 CUO.116: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.117: 8 residues within 4Å: Chain Y: H.41, H.60, H.69, H.179, H.183, F.206, H.210, L.344 7 PLIP interactions: 7 interactions with chain Y Hydrogen bonds: Y:H.60 Metal complexes: Y:H.41, Y:H.60, Y:H.69, Y:H.179, Y:H.183, Y:H.210 CUO.118: 9 residues within 4Å: Chain Y: H.462, C.480, H.482, F.487, H.491, H.603, H.607, H.634, L.763 7 PLIP interactions: 7 interactions with chain Y Hydrogen bonds: Y:H.482 Metal complexes: Y:H.462, Y:H.482, Y:H.491, Y:H.603, Y:H.607, Y:H.634 CUO.119: 8 residues within 4Å: Chain Y: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046 7 PLIP interactions: 7 interactions with chain Y Hydrogen bonds: Y:H.897 Metal complexes: Y:H.877, Y:H.897, Y:H.906, Y:H.1015, Y:H.1019, Y:H.1046 CUO.120: 8 residues within 4Å: Chain Y: H.1294, C.1312, H.1314, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain Y Hydrogen bonds: Y:H.1314 Metal complexes: Y:H.1294, Y:H.1314, Y:H.1323, Y:H.1427, Y:H.1431, Y:H.1458 CUO.121: 10 residues within 4Å: Chain Z: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 7 PLIP interactions: 7 interactions with chain Z Hydrogen bonds: Z:H.146 Metal complexes: Z:H.126, Z:H.146, Z:H.155, Z:H.267, Z:H.271, Z:H.298 CUO.122: 7 residues within 4Å: Chain Z: H.543, H.561, H.570, H.680, H.684, F.707, H.711 7 PLIP interactions: 7 interactions with chain Z Hydrogen bonds: Z:H.561 Metal complexes: Z:H.543, Z:H.561, Z:H.570, Z:H.680, Z:H.684, Z:H.711 CUO.123: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CUO.124: 8 residues within 4Å: Chain 1: H.41, C.58, H.60, H.69, H.179, H.183, F.206, H.210 6 PLIP interactions: 6 interactions with chain 1 Metal complexes: 1:H.41, 1:H.60, 1:H.69, 1:H.179, 1:H.183, 1:H.210 CUO.125: 9 residues within 4Å: Chain 1: H.462, C.480, H.482, H.491, H.603, H.607, F.630, H.634, L.763 7 PLIP interactions: 7 interactions with chain 1 Hydrogen bonds: 1:H.482 Metal complexes: 1:H.462, 1:H.482, 1:H.491, 1:H.603, 1:H.607, 1:H.634 CUO.126: 8 residues within 4Å: Chain 1: H.877, C.895, H.897, H.906, H.1015, H.1019, F.1042, H.1046 7 PLIP interactions: 7 interactions with chain 1 Hydrogen bonds: 1:H.897 Metal complexes: 1:H.877, 1:H.897, 1:H.906, 1:H.1015, 1:H.1019, 1:H.1046 CUO.127: 8 residues within 4Å: Chain 1: H.1294, C.1312, H.1314, H.1323, H.1427, H.1431, F.1454, H.1458 7 PLIP interactions: 7 interactions with chain 1 Hydrogen bonds: 1:H.1314 Metal complexes: 1:H.1294, 1:H.1314, 1:H.1323, 1:H.1427, 1:H.1431, 1:H.1458 CUO.128: 10 residues within 4Å: Chain 2: H.126, C.144, H.146, F.151, H.155, H.267, H.271, F.294, H.298, L.429 6 PLIP interactions: 6 interactions with chain 2 Metal complexes: 2:H.126, 2:H.146, 2:H.155, 2:H.267, 2:H.271, 2:H.298 CUO.129: 8 residues within 4Å: Chain 2: H.543, C.559, H.561, H.570, H.680, H.684, F.707, H.711 6 PLIP interactions: 6 interactions with chain 2 Metal complexes: 2:H.543, 2:H.561, 2:H.570, 2:H.680, 2:H.684, 2:H.711 CUO.130: 8 residues within 4Å: Chain 3: H.41, H.60, H.69, H.169, H.173, F.196, H.199, H.200 6 PLIP interactions: 6 interactions with chain 3 Hydrogen bonds: 3:H.169 Metal complexes: 3:H.41, 3:H.60, 3:H.69, 3:H.169, 3:H.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gai, Z. et al., Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 angstrom Resolution. Structure (2015)

Release Date

2015-10-14

Peptides

hemocyanin: ADGJMPSVY1
hemocyanin: BEHKNQTWZ2
hemocyanin: CFILORUX03

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

M
M

P
P

S
S

V
V

Y
Y

1
b

B
B

E
E

H
H

K
K

N
N

Q
Q

T
T

W
W

Z
Z

2
c

C
C

F
F

I
I

L
L

O
O

R
R

U
U

X
X

0
a

3
d

hemocyanin

hemocyanin

hemocyanin