SMTL ID : 4ydh.1

The structure of human FMNL1 N-terminal domains bound to Cdc42

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 21 residues within 4Å: Chain B: G.14, A.15, V.16, G.17, K.18, T.19, C.20, S.32, Y.34, V.35, P.36, T.37, T.60, G.62, Q.118, D.120, L.121, S.160, A.161, L.162 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:A.15, B:V.16, B:G.17, B:K.18, B:K.18, B:K.18, B:T.19, B:T.19, B:C.20, B:S.32, B:T.37, B:T.60, B:G.62, B:Q.118, B:Q.118, B:A.161, B:L.162 Salt bridges: B:D.120 pi-Stacking: B:F.30 GNP.3: 21 residues within 4Å: Chain D: D.13, G.14, A.15, V.16, G.17, K.18, T.19, C.20, F.30, Y.34, V.35, P.36, T.37, G.62, Q.118, D.120, L.121, S.160, A.161, L.162 Ligands: MG.4 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:A.15, D:V.16, D:G.17, D:K.18, D:T.19, D:C.20, D:P.31, D:Y.34, D:T.37, D:T.60, D:G.62, D:Q.118, D:Q.118, D:A.161, D:L.162 Salt bridges: D:D.120 pi-Stacking: D:F.30, D:F.30

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: T.19, T.37, D.59 Ligands: GNP.1 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.19, B:T.37 MG.4: 5 residues within 4Å: Chain D: T.19, T.37, D.59, T.60 Ligands: GNP.3 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:T.19, D:T.37, D:D.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, S. et al., The structure of FMNL2-Cdc42 yields insights into the mechanism of lamellipodia and filopodia formation. Nat Commun (2015)

Release Date

2015-05-13

Peptides

Formin-like protein 1: AC
Cell division control protein 42 homolog: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Formin-like protein 1

Cell division control protein 42 homolog

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