SMTL ID : 4ydm.1

High resolution crystal structure of human transthyretin bound to ligand and conjugates of 3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl)phenyl fluorosulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-tetramer

Ligands

4 x 4AJ: 2,6-dichloro-4-[5-(3-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol(Non-covalent)

4AJ.1: 17 residues within 4Å: Chain A: X.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Chain C: X.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: 4AJ.3 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.17 Hydrogen bonds: C:S.117, C:S.117, A:S.117 4AJ.2: 15 residues within 4Å: Chain B: X.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: X.15, L.17, T.106, L.110, S.117, T.118, T.119 Ligands: 4AJ.4 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:S.117, B:S.117 Water bridges: D:T.106 Hydrophobic interactions: B:L.17, B:T.119 4AJ.3: 17 residues within 4Å: Chain A: X.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain C: X.15, L.17, T.106, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: 4AJ.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.17 Hydrogen bonds: A:S.117, A:S.117, C:S.117 4AJ.4: 15 residues within 4Å: Chain B: X.15, L.17, T.106, L.110, S.117, T.118, T.119 Chain D: X.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: 4AJ.2 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:L.17, D:T.119 Hydrogen bonds: D:S.117, B:S.117 Water bridges: B:T.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baranczak, A. et al., A Fluorogenic Aryl Fluorosulfate for Intraorganellar Transthyretin Imaging in Living Cells and in Caenorhabditis elegans. J.Am.Chem.Soc. (2015)

Release Date

2015-07-15

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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