SMTL ID : 4ydn.1

High resolution crystal structure of human transthyretin bound to ligand and conjugates of 4-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl)phenyl fluorosulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-tetramer

Ligands

4 x 2WN: 4-[5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenyl sulfurofluoridate(Non-covalent)

2WN.1: 18 residues within 4Å: Chain A: X.15, L.17, A.108, L.110, S.117, T.118 Chain C: M.13, X.15, L.17, E.54, A.108, L.110, S.117, T.118, T.119 Ligands: 4B8.2, 2WN.4, 4B8.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.117, C:S.117 Hydrophobic interactions: C:A.108 2WN.3: 17 residues within 4Å: Chain B: M.13, X.15, L.17, E.54, T.106, L.110, S.117, T.118, T.119 Chain D: X.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: 2WN.6 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:L.17 Hydrogen bonds: D:S.117, B:S.117 2WN.4: 18 residues within 4Å: Chain A: M.13, X.15, L.17, E.54, A.108, L.110, S.117, T.118, T.119 Chain C: X.15, L.17, A.108, L.110, S.117, T.118 Ligands: 2WN.1, 4B8.2, 4B8.5 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:A.108 Hydrogen bonds: A:S.117, C:S.117 2WN.6: 17 residues within 4Å: Chain B: X.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: M.13, X.15, L.17, E.54, T.106, L.110, S.117, T.118, T.119 Ligands: 2WN.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.17 Hydrogen bonds: B:S.117, D:S.117

2 x 4B8: 2,6-dichloro-4-[5-(4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol(Non-covalent)

4B8.2: 13 residues within 4Å: Chain A: X.15, L.17, A.108, L.110, S.117 Chain C: X.15, L.17, T.106, L.110, S.117 Ligands: 2WN.1, 2WN.4, 4B8.5 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:L.17, A:L.110, C:L.110 Hydrogen bonds: A:S.117, A:S.117, C:S.117 4B8.5: 13 residues within 4Å: Chain A: X.15, L.17, T.106, L.110, S.117 Chain C: X.15, L.17, A.108, L.110, S.117 Ligands: 2WN.1, 4B8.2, 2WN.4 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.110, C:L.17, C:L.110 Hydrogen bonds: A:S.117, C:S.117, C:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baranczak, A. et al., A Fluorogenic Aryl Fluorosulfate for Intraorganellar Transthyretin Imaging in Living Cells and in Caenorhabditis elegans. J.Am.Chem.Soc. (2015)

Release Date

2015-07-15

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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