SMTL ID : 4yfd.1

Crystal structure PTP delta Ig1-Fn2 in complex with IL-1RAcP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: L.46, N.98, T.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.100, A:T.100 NAG.2: 2 residues within 4Å: Chain A: N.37, S.39 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.37, A:S.39, A:S.39 NAG.3: 4 residues within 4Å: Chain A: L.9, Q.55, G.90, N.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.55 NAG.4: 4 residues within 4Å: Chain A: N.119, S.120, F.124, N.189 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.124 NAG.5: 2 residues within 4Å: Chain A: L.85, N.87 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain B: N.234, E.270 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.234 NAG.7: 4 residues within 4Å: Chain B: S.277, A.278, N.279, Q.296 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.279, B:N.279, B:Q.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamagata, A. et al., Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation. Nat Commun (2015)

Release Date

2015-05-06

Peptides

Interleukin-1 receptor accessory protein: A
Receptor-type tyrosine-protein phosphatase delta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Interleukin-1 receptor accessory protein

Receptor-type tyrosine-protein phosphatase delta