SMTL ID : 4ygw.1

RNase S in complex with stabilized S peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 4Y8: 1-hydroxypropan-2-one(Covalent)

4Y8.1: 3 residues within 4Å: Chain A: E.3, X.7, X.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.3 Water bridges: A:K.2

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Q.12, H.13 Chain B: K.20, H.98, F.99 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:F.99, A:Q.12 Salt bridges: B:K.20, B:H.98, A:H.13 SO4.3: 2 residues within 4Å: Chain B: T.66, G.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.67 Water bridges: B:T.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Assem, N. et al., Acetone-Linked Peptides: A Convergent Approach for Peptide Macrocyclization and Labeling. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-07-01

Peptides

S-peptide: ACE-LYS-GLU-THR-ALA-ALA-HCS-LYS-PHE-GLU-HCS-GLN-HIS-MET-ASP-SER: A
Ribonuclease A C2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
b

B
B

S-peptide: ACE-LYS-GLU-THR-ALA-ALA-HCS-LYS-PHE-GLU-HCS-GLN-HIS-MET-ASP-SER

Ribonuclease A C2