SMTL ID : 4yic.1

CRYSTAL STRUCTURE OF A TRAP TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BORDETELLA BRONCHISEPTICA RB50 (BB0280, TARGET EFI-500035) WITH BOUND PICOLINIC ACID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: Q.157, R.178, G.180, E.215, W.216 Ligands: 6PC.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.215, A:E.215, A:W.216, H2O.3 CA.6: 6 residues within 4Å: Chain B: Q.157, R.178, G.180, E.215, W.216 Ligands: 6PC.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.215, B:E.215, B:W.216, H2O.17

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: G.74, G.75, P.79, S.80, A.81, P.198, D.201 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.80, A:S.80 Water bridges: A:G.74, A:A.81, A:A.81 ACT.3: 7 residues within 4Å: Chain A: D.341, G.344, W.345, R.347 Chain B: P.286, L.289, R.290 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.290 Salt bridges: B:R.290 Hydrogen bonds: A:W.345 ACT.7: 6 residues within 4Å: Chain B: G.74, G.75, P.79, S.80, P.198, D.201 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.80, B:S.80 Water bridges: B:A.81

2 x 6PC: PYRIDINE-2-CARBOXYLIC ACID(Non-covalent)

6PC.4: 13 residues within 4Å: Chain A: W.41, I.48, L.98, V.154, Q.157, R.178, G.180, E.215, W.216, I.217, A.244, I.246 Ligands: CA.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.41, A:I.48, A:L.98, A:W.216, A:I.217, A:I.246 Hydrogen bonds: A:G.180, A:W.216 Water bridges: A:Q.157, A:R.178 Salt bridges: A:R.178 6PC.8: 13 residues within 4Å: Chain B: W.41, I.48, L.98, V.154, Q.157, R.178, G.180, E.215, W.216, I.217, A.244, I.246 Ligands: CA.6 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.41, B:L.98, B:W.216, B:I.217, B:I.246 Hydrogen bonds: B:G.180 Water bridges: B:Q.157 Salt bridges: B:R.178

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: E.54, K.57, R.58, Q.61, E.272, Q.273, R.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.54 pi-Cation interactions: A:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., CRYSTAL STRUCTURE OF A TRAP TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BORDETELLA BRONCHISEPTICA RB50 (BB0280, TARGET EFI-500035) WITH BOUND PICOLINIC ACID. To be published

Release Date

2015-04-01

Peptides

TRAP TRANSPORTER SOLUTE BINDING PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRAP TRANSPORTER SOLUTE BINDING PROTEIN