SMTL ID : 4yil.1

OYE1 W116A COMPLEXED WITH (Z)-METHYL 3-CYANO-3-(4-FLUOROPHENYL)ACRYLATE IN A NON PRODUCTIVE BINDING MODE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: P.34, P.35, L.36, T.37, G.72, Q.114, H.191, N.194, R.243, P.295, F.296, G.324, N.325, Y.346, G.347, R.348, F.374, Y.375 Ligands: 4D3.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.36, A:P.295, A:F.296, A:R.348, A:F.374, A:Y.375 Hydrogen bonds: A:P.35, A:T.37, A:G.72, A:Q.114, A:Q.114, A:N.194, A:R.243, A:R.243, A:N.325, A:G.347, A:R.348 Water bridges: A:E.299, A:G.324, A:F.326, A:R.348, A:F.349 Salt bridges: A:R.348

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: L.27, H.29, A.31, G.65, T.66, M.67 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:A.31

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: Y.375 No protein-ligand interaction detected (PLIP)

1 x 4D3: methyl (2Z)-3-cyano-3-(4-fluorophenyl)prop-2-enoate(Non-covalent)

4D3.4: 17 residues within 4Å: Chain A: T.37, M.39, G.72, A.73, F.74, Y.82, A.85, A.116, L.118, H.191, N.194, Y.196, F.250, P.295, F.296, Y.375 Ligands: FMN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.194, A:Y.196, A:F.250, A:F.296 Hydrogen bonds: A:T.37, A:Y.375 Water bridges: A:Y.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brenna, E. et al., Opposite Enantioselectivity in the Bioreduction of (Z)-beta-Aryl-beta-cyanoacrylates Mediated by the Tryptophan 116 Mutants of Old Yellow Enzyme 1: Synthetic Approach to (R)- and (S)-beta-Aryl-gamma-lactams. Adv.Synth.Catal. (2015)

Release Date

2016-01-20

Peptides

NADPH dehydrogenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NADPH dehydrogenase 1

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