SMTL ID : 4yj0.1

Crystal structure of the DM domain of human DMRT1 bound to 25mer target DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.81 Å

Oligo State

homo-trimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.16, W.31, C.34, C.36, C.39 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.16, A:C.36, A:C.39 ZN.2: 4 residues within 4Å: Chain A: C.10, C.13, H.25, C.29 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.10, A:C.13, A:C.29 ZN.3: 4 residues within 4Å: Chain B: H.16, C.34, C.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.16, B:C.34, B:C.36, B:C.39 ZN.4: 4 residues within 4Å: Chain B: C.10, C.13, H.25, C.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.13, B:H.25, B:C.29 ZN.5: 4 residues within 4Å: Chain C: H.16, C.34, C.36, C.39 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.16, C:C.34, C:C.36, C:C.39 ZN.6: 4 residues within 4Å: Chain C: C.10, C.13, H.25, C.29 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.10, C:C.13, C:H.25, C:C.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy, M.W. et al., An ancient protein-DNA interaction underlying metazoan sex determination. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-05-27

Peptides

Doublesex- and mab-3-related transcription factor 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Doublesex- and mab-3-related transcription factor 1