- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PYR: PYRUVIC ACID(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: N.62, S.64, D.100, T.101, S.230, K.257
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.64, A:D.100, A:T.101, H2O.2, H2O.3
MG.5: 6 residues within 4Å:- Chain B: N.62, S.64, D.100, T.101, S.230, K.257
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.64, B:D.100, B:T.101, H2O.6
MG.9: 6 residues within 4Å:- Chain C: N.62, S.64, D.100, T.101, S.230, K.257
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:S.64, C:D.100, C:T.101
MG.13: 6 residues within 4Å:- Chain D: N.62, S.64, D.100, T.101, E.105, S.230
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.100, D:T.101
- 4 x SER: SERINE(Non-covalent)
SER.3: 8 residues within 4Å:- Chain A: R.30, N.31, N.57, R.93, H.451, I.456, F.457, P.458
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:R.30, A:N.57, A:H.451
- Water bridges: A:R.30, A:N.31, A:R.93, A:R.93, A:H.451
- Salt bridges: A:R.30, A:R.93, A:H.451
SER.6: 8 residues within 4Å:- Chain B: R.30, N.31, N.57, R.93, H.451, I.456, F.457, P.458
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:R.30, B:N.57, B:N.57, B:H.451
- Water bridges: B:R.30, B:R.30, B:N.31, B:H.451
- Salt bridges: B:R.30, B:R.93, B:H.451
SER.10: 8 residues within 4Å:- Chain C: R.30, N.31, N.57, R.93, H.451, I.456, F.457, P.458
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:R.30, C:N.57, C:H.451
- Water bridges: C:R.30, C:R.30, C:R.93, C:R.93
- Salt bridges: C:R.30, C:R.93, C:H.451
SER.14: 7 residues within 4Å:- Chain D: R.30, N.31, N.57, H.451, I.456, F.457, P.458
7 PLIP interactions:6 interactions with chain D, 1 Ligand-Ligand interactions- Hydrogen bonds: D:R.30, D:N.57, D:N.57, D:H.451
- Salt bridges: D:R.30, D:H.451
- Water bridges: S.14
- 3 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
FBP.7: 17 residues within 4Å:- Chain B: L.418, T.419, K.420, S.421, R.423, S.424, W.469, R.476, G.501, W.502, R.503, P.504, G.505, S.506, G.507, F.508, T.509
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:T.419, B:K.420, B:S.421, B:G.422, B:S.424, B:G.501, B:R.503, B:S.506, B:S.506, B:F.508
- Water bridges: B:R.476, B:R.476
- Salt bridges: B:K.420, B:R.476
FBP.11: 17 residues within 4Å:- Chain C: L.418, T.419, K.420, S.421, G.422, R.423, S.424, W.469, R.476, G.501, R.503, P.504, G.505, S.506, G.507, F.508, T.509
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:T.419, C:K.420, C:S.421, C:G.422, C:S.424, C:S.424, C:G.501, C:S.506, C:S.506, C:F.508, C:T.509
- Water bridges: C:R.423, C:T.509
- Salt bridges: C:K.420, C:R.476
FBP.15: 18 residues within 4Å:- Chain D: L.418, T.419, K.420, S.421, G.422, R.423, S.424, W.469, R.476, T.500, G.501, R.503, P.504, G.505, S.506, G.507, F.508, T.509
17 PLIP interactions:17 interactions with chain D- Hydrogen bonds: D:T.419, D:K.420, D:S.421, D:G.422, D:S.424, D:S.424, D:G.501, D:R.503, D:S.506, D:S.506, D:F.508, D:T.509
- Water bridges: D:R.476, D:R.476, D:R.476
- Salt bridges: D:K.420, D:R.476
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Mutations in the PKM2 exon-10 region are associated with reduced allostery and increased nuclear translocation. Commun Biol (2019)
- Release Date
- 2016-03-09
- Peptides
- Pyruvate kinase PKM: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PYR: PYRUVIC ACID(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x SER: SERINE(Non-covalent)
- 3 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Mutations in the PKM2 exon-10 region are associated with reduced allostery and increased nuclear translocation. Commun Biol (2019)
- Release Date
- 2016-03-09
- Peptides
- Pyruvate kinase PKM: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D