SMTL ID : 4ymk.2 (1 other biounit)

Crystal Structure of Stearoyl-Coenzyme A Desaturase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.94, H.99, H.131, H.135, H.275 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.94, A:H.99, A:H.131, A:H.135, A:H.275 ZN.2: 4 residues within 4Å: Chain A: H.134, H.243, H.272, H.276 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:H.243, A:H.272, A:H.276, H2O.2

1 x ST9: STEAROYL-COENZYME A(Non-covalent)

ST9.3: 32 residues within 4Å: Chain A: V.46, N.49, Y.82, A.86, I.89, T.90, H.94, F.120, Q.121, N.122, W.127, R.129, D.130, H.131, W.158, L.159, V.161, R.162, K.163, V.167, K.168, G.171, G.172, Y.228, L.232, T.235, W.236, V.238, N.239, G.265, A.266, E.269 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:V.46, A:A.86, A:T.90, A:Q.121, A:W.127, A:W.127, A:W.158, A:T.235, A:V.238, A:V.238, A:A.266, A:E.269, A:E.269 Hydrogen bonds: A:N.49, A:N.122, A:N.122, A:R.129, A:R.129, A:R.129, A:K.163, A:K.163 Water bridges: A:K.168, A:K.168 Salt bridges: A:R.129, A:R.162, A:K.163, A:K.168, A:K.168 pi-Cation interactions: A:R.129, A:R.129

1 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)

MPG.4: 13 residues within 4Å: Chain A: V.67, C.75, G.78, I.79, Y.82, M.83, R.227, L.230, S.263, L.264, V.267, I.291, F.293 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.67, A:Y.82, A:Y.82, A:Y.82, A:Y.82 Hydrogen bonds: A:S.263, A:F.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, Y. et al., X-ray structure of a mammalian stearoyl-CoA desaturase. Nature (2015)

Release Date

2015-06-24

Peptides

Acyl-CoA desaturase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Membrane

We predict this structure to be a membrane protein.
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Acyl-CoA desaturase 1

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