SMTL ID : 4yn0.1

Crystal structure of APP E2 domain in complex with DR6 CRD domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Q.24, N.43, M.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.24 NAG.3: 3 residues within 4Å: Chain B: Y.171, N.175, S.179 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: C.111, P.112, V.113, W.115, S.138, V.140 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.111, A:W.115, A:S.138, A:V.140, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., The crystal structure of DR6 in complex with the amyloid precursor protein provides insight into death receptor activation. Genes Dev. (2015)

Release Date

2015-04-15

Peptides

Tumor necrosis factor receptor superfamily member 21: A
Amyloid beta A4 protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tumor necrosis factor receptor superfamily member 21

Amyloid beta A4 protein