SMTL ID : 4ynu.1

Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: G.12, G.13, G.14, T.15, S.16, L.35, E.36, A.37, Y.53, F.57, W.63, R.81, G.83, K.84, A.85, G.88, T.89, S.90, I.92, N.93, G.94, M.95, A.96, T.233, T.234, A.235, S.274, A.275, G.276, R.279, F.504, H.505, D.537, A.538, H.548, L.549, V.550, L.553 Ligands: LGC.2 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:F.57, A:T.89, A:N.93, A:F.504, A:F.504 Hydrogen bonds: A:G.13, A:T.15, A:T.15, A:S.16, A:A.37, A:G.83, A:A.85, A:T.89, A:N.93, A:G.94, A:A.96, A:A.96, A:A.235, A:A.235, A:A.538, A:H.548, A:L.549, A:V.550 Water bridges: A:G.14, A:G.17, A:T.89, A:T.89, A:A.277, A:A.277, A:F.504, A:S.551

2 x LGC: D-glucono-1,5-lactone(Non-covalent)

LGC.2: 11 residues within 4Å: Chain A: Y.53, G.94, N.318, L.401, E.413, W.415, R.501, N.503, H.505, H.548 Ligands: FAD.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.53, A:N.318, A:R.501, A:R.501, A:N.503, A:H.505 Water bridges: A:E.413 Salt bridges: A:H.505, A:H.548 LGC.3: 5 residues within 4Å: Chain A: K.76, A.498, N.499, Y.500, R.501 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.501 Water bridges: A:K.76, A:K.76, A:A.498, A:R.501 Salt bridges: A:K.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., Structural analysis of fungus-derived FAD glucose dehydrogenase. Sci Rep (2015)

Release Date

2015-09-02

Peptides

Glucose oxidase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose oxidase, putative

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