SMTL ID : 4yos.1

p107 pocket domain complexed with LIN52 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.55, R.73, L.123, S.128, P.129, R.130 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.55 Water bridges: A:S.65 Salt bridges: A:R.73, A:R.130 SO4.2: 3 residues within 4Å: Chain A: R.9, S.161, R.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.162 Water bridges: A:D.163 Salt bridges: A:R.9

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: E.120, L.123, F.124, R.130, T.131, F.132, H.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.130, A:T.131, A:F.132 EDO.4: 3 residues within 4Å: Chain A: K.166, H.167, S.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.167, A:S.170 EDO.5: 2 residues within 4Å: Chain A: N.308, S.309 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.309 EDO.6: 5 residues within 4Å: Chain A: Q.174, E.177, S.178, H.272, H.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.174, A:H.310 Water bridges: A:N.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guiley, K.Z. et al., Structural mechanisms of DREAM complex assembly and regulation. Genes Dev. (2015)

Release Date

2015-05-27

Peptides

Retinoblastoma-like protein 1,Retinoblastoma-like protein 1: A
Protein lin-52 homolog: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Retinoblastoma-like protein 1,Retinoblastoma-like protein 1

Protein lin-52 homolog

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