SMTL ID : 4yp2.1

Cleavage of nicotinamide adenine dinucleotides by the ribosome inactivating protein from Momordica charantia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: T.226, N.227, T.229, S.230, K.231 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.226, A:T.229 Water bridges: A:N.227, A:N.227, A:N.227, A:N.227, A:S.230, A:S.230, A:S.230, A:K.231

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 12 residues within 4Å: Chain A: V.69, Y.70, I.71, F.83, G.109, N.110, Y.111, L.114, I.155, A.159, E.160, R.163 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.111, A:I.155, A:I.155 Hydrogen bonds: A:I.71, A:G.109, A:R.163, A:R.163 pi-Stacking: A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinkovic, M. et al., Cleavage of nicotinamide adenine dinucleotide by the ribosome-inactivating protein from Momordica charantia. Acta Crystallogr.,Sect.F (2015)

Release Date

2015-05-20

Peptides

Ribosome-inactivating protein momordin I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ribosome-inactivating protein momordin I

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