SMTL ID : 4yp9.1

Crystal Structure of LuxP In Complex With a Formose Derived AI-2 Analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: Y.185, D.197 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.197, A:D.197, H2O.1, H2O.2 MG.2: 2 residues within 4Å: Chain A: E.262, I.264 No protein-ligand interaction detected (PLIP)

2 x A1B: 1-deoxy-alpha-L-xylulofuranose-1,2-borate(Non-covalent)

A1B.3: 11 residues within 4Å: Chain A: Q.57, S.59, Y.61, W.62, N.139, F.186, R.195, S.245, T.246, W.269, R.290 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.61, A:W.62 Hydrogen bonds: A:Q.57, A:Q.57, A:S.59, A:S.59, A:N.139, A:R.195, A:R.195, A:T.246, A:T.246, A:R.290, A:R.290 A1B.5: 10 residues within 4Å: Chain B: Q.57, S.59, Y.61, W.62, N.139, R.195, S.245, T.246, W.269, R.290 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.61, B:W.62 Hydrogen bonds: B:Q.57, B:S.59, B:S.59, B:N.139, B:R.195, B:R.195, B:T.246, B:T.246, B:R.290, B:R.290

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 1 residues within 4Å: Chain B: D.197 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.197, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sattin, S., Discovery of Glycomimetic Agonists from a Protocell Metabolism, Proto-natural Product Libraries. To Be Published

Release Date

2016-03-23

Peptides

Autoinducer 2-binding periplasmic protein LuxP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Autoinducer 2-binding periplasmic protein LuxP

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