SMTL ID : 4ypt.2 (1 other biounit)

X-ray structural of three tandemly linked domains of nsp3 from murine hepatitis virus at 2.60 Angstroms resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.270, C.272, C.304, C.306 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.270, A:C.272, A:C.304, A:C.306 ZN.7: 4 residues within 4Å: Chain B: C.270, C.272, C.304, C.306 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.270, B:C.272, B:C.304, B:C.306 ZN.13: 4 residues within 4Å: Chain C: C.270, C.272, C.304, C.306 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.270, C:C.272, C:C.304, C:C.306

15 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: F.117, C.118, D.119, G.120, F.138, Y.165, Y.166, L.169 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.117, A:G.120, A:Y.165, A:Y.166 Water bridges: A:D.119, A:D.119 GOL.3: 6 residues within 4Å: Chain A: S.188, N.189 Chain C: G.344, S.346, V.347, H.349 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.346, C:S.346, C:H.349, A:N.189 GOL.4: 7 residues within 4Å: Chain A: L.266, F.268, R.279, H.287, F.288, Y.300, I.302 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.279, A:H.287, A:F.288, A:Y.300, A:Y.300 GOL.5: 4 residues within 4Å: Chain A: G.261, N.317, V.318, P.319 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.261 GOL.6: 5 residues within 4Å: Chain A: G.236, S.237, D.248, V.252, R.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.237, A:S.237, A:D.248, A:R.255 GOL.8: 8 residues within 4Å: Chain B: F.117, C.118, D.119, G.120, F.138, Y.165, Y.166, L.169 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.117, B:G.120, B:Y.166 Water bridges: B:D.119, B:D.119 GOL.9: 6 residues within 4Å: Chain A: G.344, S.346, V.347, H.349 Chain B: S.188, N.189 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.346, A:S.346, A:H.349, B:N.189 GOL.10: 7 residues within 4Å: Chain B: L.266, F.268, R.279, H.287, F.288, Y.300, I.302 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.279, B:H.287, B:F.288, B:Y.300, B:Y.300 GOL.11: 4 residues within 4Å: Chain B: G.261, N.317, V.318, P.319 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.261 GOL.12: 5 residues within 4Å: Chain B: G.236, S.237, D.248, V.252, R.255 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.237, B:S.237, B:D.248, B:R.255 GOL.14: 8 residues within 4Å: Chain C: F.117, C.118, D.119, G.120, F.138, Y.165, Y.166, L.169 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:F.117, C:G.120 Water bridges: C:D.119, C:D.119 GOL.15: 6 residues within 4Å: Chain B: G.344, S.346, V.347, H.349 Chain C: S.188, N.189 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:S.346, B:S.346, B:H.349, C:N.189 GOL.16: 7 residues within 4Å: Chain C: L.266, F.268, R.279, H.287, F.288, Y.300, I.302 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.279, C:F.288, C:Y.300, C:Y.300 GOL.17: 4 residues within 4Å: Chain C: G.261, N.317, V.318, P.319 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.261 GOL.18: 5 residues within 4Å: Chain C: G.236, S.237, D.248, V.252, R.255 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.237, C:S.237, C:D.248, C:R.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., X-ray Structural and Functional Studies of the Three Tandemly Linked Domains of Non-structural Protein 3 (nsp3) from Murine Hepatitis Virus Reveal Conserved Functions. J.Biol.Chem. (2015)

Release Date

2015-08-26

Peptides

Replicase polyprotein 1ab: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Replicase polyprotein 1ab

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