SMTL ID : 4yrd.1

Crystal structure of CapF with inhibitor 3-isopropenyl-tropolone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.278, H.280, E.285, H.327 Ligands: 3IT.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.278, A:E.285, A:H.327 ZN.3: 5 residues within 4Å: Chain B: H.278, H.280, E.285, H.327 Ligands: 3IT.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.278, B:E.285, B:H.327

2 x 3IT: 2-hydroxy-3-(prop-1-en-2-yl)cyclohepta-2,4,6-trien-1-one(Non-covalent)

3IT.2: 11 residues within 4Å: Chain A: F.252, N.267, K.275, G.276, H.278, E.285, F.287, H.327, I.329, M.341 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.252, A:F.252, A:K.275, A:I.329 3IT.4: 10 residues within 4Å: Chain B: F.252, K.275, G.276, H.278, E.285, F.287, H.327, I.329, M.341 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.252, B:F.252, B:K.275, B:I.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakano, K. et al., Discovery and characterization of natural tropolones as inhibitors of the antibacterial target CapF from Staphylococcus aureus. Sci Rep (2015)

Release Date

2015-10-21

Peptides

Capsular polysaccharide synthesis enzyme Cap5F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsular polysaccharide synthesis enzyme Cap5F