- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HIS: HISTIDINE(Non-covalent)
- 2 x 4JM: 4-(methylsulfanyl)aniline(Non-covalent)
4JM.2: 9 residues within 4Å:- Chain A: I.84, P.103, C.132, W.133, R.134, R.143, R.144, E.145, H.146
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:R.134
- Hydrogen bonds: A:P.103
- pi-Stacking: A:H.146
4JM.10: 9 residues within 4Å:- Chain B: I.84, P.103, C.132, W.133, R.134, R.143, R.144, E.145, H.146
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:R.134
- Hydrogen bonds: B:P.103
- pi-Stacking: B:H.146
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 6 residues within 4Å:- Chain A: E.74, L.75, I.77, R.78, T.326, Y.327
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.74, A:I.77
EDO.4: 6 residues within 4Å:- Chain A: T.93, G.95, H.97
- Chain B: Q.33, Y.135, R.144
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.135, B:Y.135, B:R.144, B:R.144, A:G.95
EDO.11: 6 residues within 4Å:- Chain B: E.74, L.75, I.77, R.78, T.326, Y.327
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.74, B:I.77
EDO.12: 6 residues within 4Å:- Chain A: Q.33, Y.135, R.144
- Chain B: T.93, G.95, H.97
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.135, A:R.144, A:R.144, B:G.95
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: R.47, F.50, H.54
- Chain B: R.47
- Ligands: SO4.13
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.47
- Salt bridges: A:R.47, A:H.54, B:R.47
SO4.6: 6 residues within 4Å:- Chain A: R.143, H.146, G.341, D.342, C.343, V.344
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.342, A:D.342, A:C.343, A:V.344
- Water bridges: A:I.345
- Salt bridges: A:R.143, A:H.146
SO4.7: 4 residues within 4Å:- Chain A: R.174, S.179, S.180, W.283
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.180, A:W.283
- Water bridges: A:R.174
- Salt bridges: A:R.174
SO4.13: 5 residues within 4Å:- Chain A: R.47
- Chain B: R.47, F.50, H.54
- Ligands: SO4.5
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.47
- Salt bridges: B:R.47, B:H.54, A:R.47
SO4.14: 6 residues within 4Å:- Chain B: R.143, H.146, G.341, D.342, C.343, V.344
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.342, B:D.342, B:D.342, B:C.343, B:V.344
- Water bridges: B:I.345
- Salt bridges: B:R.143, B:H.146
SO4.15: 4 residues within 4Å:- Chain B: R.174, S.179, S.180, W.283
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.180, B:W.283
- Water bridges: B:R.174
- Salt bridges: B:R.174
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.8: 4 residues within 4Å:- Chain A: W.171, R.174, S.175, Y.280
2 PLIP interactions:2 interactions with chain A- pi-Cation interactions: A:W.171, A:W.171
DMS.16: 4 residues within 4Å:- Chain B: W.171, R.174, S.175, Y.280
2 PLIP interactions:2 interactions with chain B- pi-Cation interactions: B:W.171, B:W.171
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koh, C.Y. et al., A binding hotspot in Trypanosoma cruzi histidyl-tRNA synthetase revealed by fragment-based crystallographic cocktail screens. Acta Crystallogr. D Biol. Crystallogr. (2015)
- Release Date
- 2015-08-12
- Peptides
- Histidyl-tRNA synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HIS: HISTIDINE(Non-covalent)
- 2 x 4JM: 4-(methylsulfanyl)aniline(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koh, C.Y. et al., A binding hotspot in Trypanosoma cruzi histidyl-tRNA synthetase revealed by fragment-based crystallographic cocktail screens. Acta Crystallogr. D Biol. Crystallogr. (2015)
- Release Date
- 2015-08-12
- Peptides
- Histidyl-tRNA synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A