SMTL ID : 4ys6.1

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: T.45, K.46, Y.73, S.75 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: S.203, S.205, R.224, I.228 Ligand excluded by PLIP

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.3: 13 residues within 4Å: Chain A: L.48, R.50, W.51, D.124, R.125, D.176, N.178, F.182, W.216, N.246, Q.271, D.272, K.292 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.50, A:W.51, A:D.124, A:D.124, A:D.124, A:R.125, A:N.178, A:N.246, A:D.272, A:K.292 Water bridges: A:T.138, A:S.248, A:D.272, A:D.272 Salt bridges: A:R.125

5 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: A.307, I.308, G.311, G.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.307, A:G.312 NA.5: 2 residues within 4Å: Chain A: E.154, N.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.154, A:E.154 NA.6: 3 residues within 4Å: Chain A: S.75, N.76, D.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.77 NA.7: 1 residues within 4Å: Chain A: V.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.316 NA.8: 2 residues within 4Å: Chain A: N.52, S.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE. To be published

Release Date

2015-04-08

Peptides

Putative solute-binding component of ABC transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative solute-binding component of ABC transporter