- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 4 residues within 4Å:- Chain A: V.49, D.51, D.52, V.222
No protein-ligand interaction detected (PLIP)MPD.4: 2 residues within 4Å:- Chain A: A.8, R.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.8
- Water bridges: A:R.12
MPD.8: 6 residues within 4Å:- Chain A: I.255, F.310, H.317
- Chain B: L.104, A.135, P.137
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.255, B:L.104, B:P.137
MPD.12: 9 residues within 4Å:- Chain A: L.104, A.135, P.137, V.140
- Chain C: I.255, I.298, A.300, F.310, H.317
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:I.298, C:F.310, A:L.104, A:P.137
MPD.14: 6 residues within 4Å:- Chain B: I.255, I.298, F.310, H.317
- Chain C: L.104, P.137
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.255, B:I.298, B:F.310, C:P.137
- Water bridges: C:G.138
MPD.15: 1 residues within 4Å:- Chain C: E.44
3 PLIP interactions:3 interactions with chain C- Water bridges: C:V.42, C:E.44, C:E.44
- 5 x ACY: ACETIC ACID(Non-functional Binders)
ACY.5: 9 residues within 4Å:- Chain A: G.138, M.139, V.140, P.141, W.142, Y.201, V.205, M.208
- Chain C: E.311
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:M.139, A:W.142, C:E.311
- Water bridges: A:Y.201
ACY.9: 9 residues within 4Å:- Chain A: E.311
- Chain B: G.138, M.139, V.140, P.141, W.142, Y.201, V.205, M.208
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:M.139, B:W.142, B:Y.201
ACY.10: 4 residues within 4Å:- Chain B: T.90, M.92, N.113, P.114
No protein-ligand interaction detected (PLIP)ACY.16: 2 residues within 4Å:- Chain C: K.47, E.56
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.56
ACY.17: 4 residues within 4Å:- Chain C: H.26, Q.28, Y.170, D.171
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:Q.28, C:Y.170
- Water bridges: C:H.26, C:H.26
- Salt bridges: C:H.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, Y. et al., Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-03-09
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 5 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, Y. et al., Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography. Proc.Natl.Acad.Sci.USA (2016)
- Release Date
- 2016-03-09
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C