SMTL ID : 4yt2.1

Hmd II from Methanocaldococcus jannaschii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 2 residues within 4Å: Chain A: N.56, N.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.56, A:N.56, A:N.58

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: K.6, K.84, H.85, P.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.6 PEG.3: 7 residues within 4Å: Chain A: V.252, E.253, T.254, S.255, G.256 Chain B: K.235, E.238 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.238 PEG.4: 6 residues within 4Å: Chain A: C.120, A.151, V.152, M.207 Chain B: S.275, M.276 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.150, A:A.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujishiro, T. et al., Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs. Febs J. (2015)

Release Date

2015-07-01

Peptides

H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338