SMTL ID : 4yvp.1 (1 other biounit)

Crystal Structure of AKR1C1 complexed with glibenclamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, H.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, L.306 Ligands: GBM.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.306 Hydrogen bonds: A:T.23, A:Y.24, A:Y.24, A:D.50, A:D.50, A:K.84, A:S.166, A:N.167, A:N.167, A:S.217, A:L.219, A:G.220, A:S.221, A:H.222, A:K.270, A:S.271, A:Y.272, A:N.273, A:Q.279, A:N.280 Water bridges: A:Q.279, A:Q.279 Salt bridges: A:H.222, A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x GBM: 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide(Non-covalent)

GBM.2: 14 residues within 4Å: Chain A: Y.24, L.54, Y.55, W.86, H.117, F.118, I.129, H.222, E.224, W.227, L.306, L.308, F.311 Ligands: NAP.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.55, A:W.86, A:W.86, A:F.118, A:W.227, A:L.308, A:F.311 Hydrogen bonds: A:Y.55 pi-Stacking: A:Y.24, A:W.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., In vitro inhibition of AKR1Cs by sulphonylureas and the structural basis. Chem.Biol.Interact. (2015)

Release Date

2015-11-25

Peptides

Aldo-keto reductase family 1 member C1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C1

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