SMTL ID : 4yvx.1 (1 other biounit)

Crystal structure of AKR1C3 complexed with glimepiride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GMR: 3-ethyl-4-methyl-N-[2-(4-{[(cis-4-methylcyclohexyl)carbamoyl]sulfamoyl}phenyl)ethyl]-2-oxo-2,5-dihydro-1H-pyrrole-1-car boxamide(Non-covalent)

GMR.1: 14 residues within 4Å: Chain A: Y.24, L.54, Y.55, W.86, H.117, S.118, L.122, S.129, N.167, W.227, F.306, S.308, F.311 Ligands: NAP.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.24, A:W.86, A:W.86, A:W.86, A:L.122, A:W.227, A:W.227, A:F.306, A:F.306, A:F.306, A:F.311 Hydrogen bonds: A:Y.55, A:H.117

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 29 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280 Ligands: GMR.1 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:T.23, A:Y.24, A:D.50, A:Y.55, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:K.270, A:K.270, A:Y.272, A:Q.279, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., In vitro inhibition of AKR1Cs by sulphonylureas and the structural basis. Chem.Biol.Interact. (2015)

Release Date

2015-11-25

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

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