SMTL ID : 4ywq.1

Crystal structure of the ROQ domain of human Roquin-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.119, H.158 Ligands: CL.4, CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.119, A:H.158

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.92, R.93, S.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.92, A:S.95

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: V.130, M.134, L.138, R.139, I.140, W.145, Q.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.138, A:I.140, A:Q.167 Water bridges: A:I.140 EDO.14: 5 residues within 4Å: Chain B: Y.92, S.95, C.96, F.97, V.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.97 Water bridges: B:K.112

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: E.119, R.123, H.158 Ligands: ZN.1, CL.5 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: E.119, H.158 Ligands: ZN.1, CL.4 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Y.118, E.119 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: S.154, K.156, S.157 Ligands: CL.8 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain A: S.154, H.155, K.156, S.157, H.158 Ligands: CL.7 Ligand excluded by PLIP

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.9: 3 residues within 4Å: Chain A: F.76, P.77, Q.78 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: F.36, G.38 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain A: D.105, S.106 Chain B: D.55 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain A: K.47, L.50, L.51 No protein-ligand interaction detected (PLIP) UNX.13: 3 residues within 4Å: Chain A: F.67, R.71 Chain B: Q.70 No protein-ligand interaction detected (PLIP) UNX.15: 3 residues within 4Å: Chain B: S.147, D.152, Q.153 No protein-ligand interaction detected (PLIP) UNX.16: 2 residues within 4Å: Chain B: E.43, Y.150 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Crystal structure of the ROQ domain of human Roquin-1. To be Published

Release Date

2015-04-22

Peptides

Roquin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Roquin-1