SMTL ID : 4ywt.4 (3 other biounits)

Crystal structure of full-length glypican-1 core protein after controlled crystal dehydration to 87% relative humidity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Q.111, H.112, N.115, R.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.111, A:R.148 Water bridges: A:N.115

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: I.436, E.442 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.436, A:E.442, H2O.1 CA.3: 2 residues within 4Å: Chain A: D.387, D.390 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.387, A:D.390, A:D.390, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Awad, W. et al., Structural Aspects of N-Glycosylations and the C-terminal Region in Human Glypican-1. J.Biol.Chem. (2015)

Release Date

2015-07-29

Peptides

Glypican-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Glypican-1

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