SMTL ID : 4yyz.1

11B-HYDROXYSTEROID DEHYDROGENASE TYPE I IN COMPLEX WITH INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 34 residues within 4Å: Chain A: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, T.67, M.68, E.69, N.94, H.95, I.96, T.97, N.98, V.117, Y.122, V.143, S.144, S.145, L.146, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: 4JX.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.190 Hydrogen bonds: A:S.18, A:S.18, A:S.18, A:K.19, A:I.21, A:R.41, A:S.42, A:T.67, A:M.68, A:N.94, A:I.96, A:Y.158, A:Y.158, A:K.162, A:I.193, A:I.193, A:T.195, A:T.195, A:T.197 Salt bridges: A:K.19, A:R.41 pi-Cation interactions: A:R.41 NAP.3: 33 residues within 4Å: Chain B: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, T.67, M.68, E.69, N.94, H.95, I.96, N.98, V.117, Y.122, V.143, S.144, S.145, L.146, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: 4JX.4 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:L.190 Hydrogen bonds: B:S.18, B:S.18, B:S.18, B:S.18, B:K.19, B:I.21, B:R.41, B:R.41, B:S.42, B:T.67, B:M.68, B:I.96, B:Y.122, B:Y.158, B:Y.158, B:K.162, B:I.193, B:I.193 Salt bridges: B:K.19, B:R.41

2 x 4JX: N-[(1R,2s,3S,5s,7s)-5-hydroxytricyclo[3.3.1.1~3,7~]dec-2-yl]-5,7-dimethylpyrazolo[1,5-a]pyrimidine-3-carboxamide(Non-covalent)

4JX.2: 17 residues within 4Å: Chain A: I.96, T.99, L.101, S.145, L.146, Y.152, P.153, V.155, Y.158, L.190, G.191, L.192, T.197, A.198, A.201 Chain B: Y.255 Ligands: NAP.1 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.99, A:L.101, A:L.146, A:Y.152, A:Y.152, A:V.155, A:L.192, A:A.198, A:A.201, B:Y.255 Hydrogen bonds: A:S.145 4JX.4: 18 residues within 4Å: Chain A: Y.255 Chain B: I.96, T.99, L.101, S.145, L.146, Y.152, V.155, Y.158, L.190, G.191, L.192, T.197, A.198, A.201, V.202, I.205 Ligands: NAP.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:T.99, B:L.101, B:V.155, B:A.198, B:A.201, B:I.205 Hydrogen bonds: B:T.99, B:S.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robb, G.R. et al., Design of pyrozolo-pyrimidines as 11beta-HSD1 inhibitors through optimisation of molecular electrostatic potential. Medchemcomm (2016)

Release Date

2016-02-03

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Corticosteroid 11-beta-dehydrogenase isozyme 1