SMTL ID : 4z0v.1

The structure of human PDE12 residues 161-609

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: N.132, E.182 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.182, H2O.1, H2O.1, H2O.2, H2O.8, H2O.9

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: S.38, G.84, D.85, G.86, Q.87, R.88, F.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.85, A:G.86, A:R.88 GOL.3: 4 residues within 4Å: Chain A: Q.227, H.228, D.229, I.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.228 Water bridges: A:H.228, A:D.229 GOL.4: 4 residues within 4Å: Chain A: L.224, L.225, S.226, Q.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.224 Water bridges: A:Q.227, A:Q.227 GOL.5: 3 residues within 4Å: Chain A: L.398, N.399, K.440 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.399, A:K.440 GOL.6: 4 residues within 4Å: Chain A: W.290, P.292, R.298, N.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.329 Water bridges: A:R.298, A:R.298 GOL.7: 6 residues within 4Å: Chain A: L.245, K.248, A.303, F.339, L.365, T.366 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.248, A:T.366 Water bridges: A:L.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, E.R. et al., The Role of Phosphodiesterase 12 (PDE12) as a Negative Regulator of the Innate Immune Response and the Discovery of Antiviral Inhibitors. J.Biol.Chem. (2015)

Release Date

2015-06-17

Peptides

2',5'-phosphodiesterase 12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2',5'-phosphodiesterase 12