SMTL ID : 4z1u.1 (1 other biounit)

MIF in complex with 1-(4-methylphenyl)-3-phenylprop-2-yn-1-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71 SO4.2: 6 residues within 4Å: Chain A: P.15, D.16, G.17, F.18, L.19, S.20 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.15, A:G.17, A:F.18, A:L.19, A:S.20 SO4.5: 6 residues within 4Å: Chain B: P.15, D.16, G.17, F.18, L.19, S.20 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.17, B:F.18, B:L.19, B:S.20 SO4.6: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.68, C:G.69, C:A.70, C:Q.71 SO4.7: 2 residues within 4Å: Chain C: A.70, R.73 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.73 SO4.8: 2 residues within 4Å: Chain C: E.85, R.86 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.85 Salt bridges: C:R.86

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: X.1, K.32, I.64, F.113 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.32, A:I.64, A:I.64 GOL.4: 3 residues within 4Å: Chain A: G.65, K.66, Q.71 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.66, A:Q.71, A:Q.71 Water bridges: A:I.67, A:I.67 GOL.9: 4 residues within 4Å: Chain C: G.65, K.66, I.67, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.66, C:I.67, C:Q.71 Water bridges: C:I.67 GOL.10: 2 residues within 4Å: Chain C: X.1, F.113 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structural basis for decreased induction of class IB PI3-kinases expression by MIF inhibitors. J. Cell. Mol. Med. (2017)

Release Date

2016-09-28

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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