SMTL ID : 4z2e.1

Quinolone(Trovafloxacin)-DNA cleavage complex of gyrase from S. pneumoniae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.46 Å

Oligo State

hetero-oligomer

Ligands

2 x TR6: Trovafloxacin(Non-covalent)

TR6.1: 11 residues within 4Å: Chain B: G.55, R.77, G.78, E.96 Chain C: S.81 Chain F: G.1, A.2 Chain G: C.4, A.5 Chain H: T.15 Ligands: MG.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.96 TR6.3: 11 residues within 4Å: Chain A: S.81 Chain D: G.55, R.77, G.78, E.96 Chain E: T.15 Chain F: C.4, A.5 Chain G: G.1, A.2 Ligands: MG.4 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.96, D:E.96

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain C: S.81 Ligands: TR6.1 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: TR6.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laponogov, I. et al., Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae. To Be Published

Release Date

2016-09-14

Peptides

DNA gyrase subunit A: AC
DNA gyrase subunit B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

DNA gyrase subunit A

DNA gyrase subunit B

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