SMTL ID : 4z3c.1

Zinc finger region of human TET3 in complex with CpG DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain B: T.8, T.9 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain C: C.11, C.14, V.45 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain C: C.26, T.27, K.39 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain C: E.15, P.16, R.19, L.40 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain C: C.11, G.12, C.14, C.17, C.43, E.44 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.11, C:C.14, C:C.17, C:C.43 ZN.3: 6 residues within 4Å: Chain C: C.23, G.24, C.26, C.29, C.38, K.39 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.23, C:C.26, C:C.29, C:C.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants. Structure (2017)

Release Date

2015-04-29

Peptides

Methylcytosine dioxygenase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

Methylcytosine dioxygenase