SMTL ID : 4z4h.1

Human Argonaute2 A481T Mutant Bound to t1-A Target RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: D.597, V.598 Chain B: C.10 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.597, A:V.598, H2O.1, H2O.2, H2O.4 MG.6: 1 residues within 4Å: Chain B: A.13 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain C: U.4 No protein-ligand interaction detected (PLIP)

4 x IPH: PHENOL(Non-covalent)

IPH.2: 7 residues within 4Å: Chain A: L.650, I.651, Y.654, K.660, L.694, E.695, Y.698 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.660, A:K.660 Hydrogen bonds: A:L.650 pi-Stacking: A:Y.698 IPH.3: 7 residues within 4Å: Chain A: F.587, Q.589, P.590, V.591, A.620, F.653, T.657 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.587, A:V.591, A:A.620 IPH.4: 5 residues within 4Å: Chain A: R.688, Q.699, P.700, I.702, D.771 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.688, A:Q.699, A:Q.699, A:I.702 Hydrogen bonds: A:R.688, A:D.771 IPH.5: 7 residues within 4Å: Chain A: D.537, M.542, A.543, K.570, D.851, T.855, Y.857 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.543, A:K.570, A:Y.857 Hydrogen bonds: A:G.541

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schirle, N.T. et al., Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. Elife (2015)

Release Date

2015-09-23

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2

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