SMTL ID : 4z79.1

Leiomodin-1 Actin-Binding Site 2 (ABS2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: F.20, P.23, M.34, E.36, V.37, N.38, V.39 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.36, A:N.38 Water bridges: A:I.19 GOL.2: 6 residues within 4Å: Chain A: F.79, A.82, I.83, K.86, A.108 Ligands: CL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.79, A:I.83, A:K.86 GOL.3: 3 residues within 4Å: Chain A: E.55, E.58, I.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.58 GOL.4: 6 residues within 4Å: Chain A: M.137, A.140, K.141, G.160, P.161, T.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.160, A:T.164 Water bridges: A:M.137 GOL.5: 6 residues within 4Å: Chain A: N.38, N.40, L.65, A.67, N.95, R.123 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.38, A:N.40, A:N.95 Water bridges: A:E.121, A:R.123 GOL.6: 4 residues within 4Å: Chain A: R.177, R.180, L.181, Q.184 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.177, A:R.180, A:R.180, A:Q.184 Water bridges: A:R.177

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: A.108, R.111 Ligands: GOL.2 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.8: 3 residues within 4Å: Chain A: K.28, E.55, A.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.55 NA.9: 6 residues within 4Å: Chain A: L.85, K.86, N.88, K.89, Q.115, N.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.86, A:K.89, A:N.116 NA.10: 1 residues within 4Å: Chain A: R.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boczkowska, M. et al., How Leiomodin and Tropomodulin use a common fold for different actin assembly functions. Nat Commun (2015)

Release Date

2015-10-21

Peptides

Leiomodin-1 Actin-Binding Site 2 (ABS2): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leiomodin-1 Actin-Binding Site 2 (ABS2)