SMTL ID : 4z7b.1

Structure of the enzyme-product complex resulting from TDG action on a GfC mismatch

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: T.86, N.87, M.88, G.107, I.110, L.111, K.114 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.86, A:T.86, A:G.107 Water bridges: A:E.90

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 6 residues within 4Å: Chain A: G.34, I.35, N.36, Y.48, N.87 Chain C: X.17 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.48 Hydrogen bonds: A:I.35, A:N.36 Water bridges: A:N.53 ACY.3: 5 residues within 4Å: Chain A: Q.151, P.152, H.153, K.154, L.161 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malik, S.S. et al., Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA. Nucleic Acids Res. (2015)

Release Date

2015-09-16

Peptides

G/T mismatch-specific thymine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G/T mismatch-specific thymine DNA glycosylase

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