SMTL ID : 4z8x.1

Truncated FtsH from A. aeolicus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.281, H.285, D.359 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.281, A:H.285, A:D.359, A:D.359, H2O.1 ZN.4: 3 residues within 4Å: Chain B: H.281, H.285, D.359 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.281, B:H.285, B:D.359, B:D.359, H2O.1 ZN.6: 4 residues within 4Å: Chain C: H.281, E.282, H.285, D.359 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.281, C:H.285, C:D.359, H2O.1 ZN.9: 3 residues within 4Å: Chain D: H.281, H.285, D.359 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.281, D:H.285, D:D.359, D:D.359, H2O.1 ZN.12: 3 residues within 4Å: Chain E: H.281, H.285, D.359 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.281, E:H.285, E:D.359, E:D.359, H2O.1 ZN.14: 4 residues within 4Å: Chain F: H.281, E.282, H.285, D.359 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.281, F:H.285, F:D.359, H2O.1

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain A: D.19, A.21, G.61, V.62, G.63, K.64, T.65, L.66, D.117, I.197, H.201, G.225, A.226, E.229 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.21, A:A.21, A:G.61, A:V.62, A:G.63, A:K.64, A:T.65, A:T.65, A:T.65, A:L.66 Salt bridges: A:K.64 ADP.7: 14 residues within 4Å: Chain C: D.19, A.21, G.61, V.62, G.63, K.64, T.65, L.66, D.117, I.197, H.201, G.225, A.226, E.229 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:A.21, C:A.21, C:G.61, C:V.62, C:G.63, C:K.64, C:T.65, C:T.65, C:T.65, C:L.66, C:E.229 Salt bridges: C:K.64 ADP.10: 14 residues within 4Å: Chain D: D.19, A.21, G.61, V.62, G.63, K.64, T.65, L.66, D.117, I.197, H.201, G.225, A.226, E.229 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:A.21, D:A.21, D:G.61, D:V.62, D:G.63, D:K.64, D:T.65, D:T.65, D:T.65, D:L.66 Salt bridges: D:K.64 ADP.15: 14 residues within 4Å: Chain F: D.19, A.21, G.61, V.62, G.63, K.64, T.65, L.66, D.117, I.197, H.201, G.225, A.226, E.229 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:A.21, F:A.21, F:G.61, F:V.62, F:G.63, F:K.64, F:T.65, F:T.65, F:T.65, F:L.66, F:E.229 Salt bridges: F:K.64

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.326, Y.330, R.416, E.420 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.330 Salt bridges: A:K.326, A:R.416 SO4.5: 4 residues within 4Å: Chain B: K.326, Y.330, R.416, E.420 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.330 Salt bridges: B:K.326, B:R.416 SO4.8: 3 residues within 4Å: Chain C: Y.330, R.416, E.420 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.330 Salt bridges: C:R.416 SO4.11: 4 residues within 4Å: Chain D: K.326, Y.330, R.416, E.420 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.330 Salt bridges: D:K.326, D:R.416 SO4.13: 4 residues within 4Å: Chain E: K.326, Y.330, R.416, E.420 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.330 Salt bridges: E:K.326, E:R.416 SO4.16: 3 residues within 4Å: Chain F: Y.330, R.416, E.420 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:Y.330 Salt bridges: F:R.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vostrukhina, M. et al., The structure of Aquifex aeolicus FtsH in the ADP-bound state reveals a C2-symmetric hexamer. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-05-06

Peptides

ATP-dependent zinc metalloprotease FtsH: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

ATP-dependent zinc metalloprotease FtsH

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