SMTL ID : 4z93.1

BRD4 bromodomain 2 in complex with gamma-carboline-containing compound, number 18.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x 4LD: 1-(3-cyclopropyl-5-methyl-1H-pyrazol-4-yl)-7-(3,5-dimethyl-1,2-oxazol-4-yl)-8-methoxy-5H-pyrido[4,3-b]indole(Non-covalent)

4LD.1: 14 residues within 4Å: Chain A: W.26, P.27, F.28, V.32, L.37, L.39, Y.42, C.81, Y.84, N.85, H.89, E.90, V.91, M.94 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.26, A:P.27, A:F.28, A:V.32, A:L.37, A:L.39, A:Y.84, A:V.91, A:V.91 Hydrogen bonds: A:P.27, A:N.85 Water bridges: A:C.81 pi-Stacking: A:W.26

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Q.99, D.100, E.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ran, X. et al., Structure-Based Design of gamma-Carboline Analogues as Potent and Specific BET Bromodomain Inhibitors. J.Med.Chem. (2015)

Release Date

2015-07-01

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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