SMTL ID : 4za2.1

Crystal structure of Pectobacterium carotovorum 2-keto-3-deoxy-D-gluconate dehydrogenase complexed with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain D: G.17, D.19, T.20, G.21, L.22, I.42, A.64, D.65, M.66, N.92, A.93, G.94, I.95, L.115, I.143, A.144, S.145, Y.158, K.162, P.188, G.189, Y.190, M.191, T.193, N.194, N.195, T.196 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:P.188 Hydrogen bonds: D:G.17, D:D.19, D:L.22, D:D.65, D:M.66, D:N.92, D:G.94, D:Y.158, D:K.162, D:M.191, D:M.191, D:T.193, D:N.194, D:N.195, D:N.195 Water bridges: D:G.23, D:I.42, D:N.92, D:N.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takase, R. et al., Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity. Proteins (2016)

Release Date

2015-04-29

Peptides

2-deoxy-D-gluconate 3-dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

2-deoxy-D-gluconate 3-dehydrogenase

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