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SMTL ID : 4zac.1
(2 other biounits)
Structure of S. cerevisiae Fdc1 with the prenylated-flavin cofactor in the iminium form.
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.65 Å
Oligo State
homo-dimer
Ligands
1 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.1:
2 residues within 4Å:
Chain A:
D.62
,
D.310
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:D.62
,
A:D.310
2 x
K
:
POTASSIUM ION
(Non-covalent)
K.2:
7 residues within 4Å:
Chain A:
W.171
,
V.225
,
S.226
,
M.228
,
E.236
Ligands:
MN.3
,
4LU.4
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:S.226
,
A:M.228
,
A:E.236
K.6:
7 residues within 4Å:
Chain B:
W.171
,
V.225
,
S.226
,
M.228
,
E.236
Ligands:
MN.5
,
4LU.7
4
PLIP interactions
:
3 interactions with chain B
,
1 Ligand-Ligand interactions
Metal complexes:
B:S.226
,
B:M.228
,
B:E.236
,
4LU.7
2 x
MN
:
MANGANESE (II) ION
(Non-covalent)
MN.3:
5 residues within 4Å:
Chain A:
N.170
,
H.193
,
E.236
Ligands:
K.2
,
4LU.4
5
PLIP interactions
:
2 interactions with chain A
,
2 Ligand-Water interactions
,
1 Ligand-Ligand interactions
Metal complexes:
A:H.193
,
A:E.236
,
H
2
O.3
,
H
2
O.7
,
4LU.4
MN.5:
5 residues within 4Å:
Chain B:
N.170
,
H.193
,
E.236
Ligands:
K.6
,
4LU.7
5
PLIP interactions
:
2 interactions with chain B
,
1 Ligand-Ligand interactions
,
2 Ligand-Water interactions
Metal complexes:
B:H.193
,
B:E.236
,
4LU.7
,
H
2
O.19
,
H
2
O.20
2 x
4LU
:
1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol
(Non-covalent)
4LU.4:
21 residues within 4Å:
Chain A:
T.155
,
N.170
,
S.172
,
I.173
,
A.174
,
R.175
,
L.187
,
Q.192
,
H.193
,
S.226
,
S.227
,
M.228
,
P.229
,
E.236
,
E.285
,
S.317
,
P.319
,
I.330
,
K.394
Ligands:
K.2
,
MN.3
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:I.173
,
A:I.173
,
A:R.175
,
A:P.319
,
A:I.330
Hydrogen bonds:
A:I.173
,
A:I.173
,
A:R.175
,
A:Q.192
,
A:H.193
,
A:S.227
Water bridges:
A:L.187
,
A:I.194
,
A:I.194
,
A:I.230
,
A:K.394
,
A:K.394
Salt bridges:
A:H.193
,
A:K.394
4LU.7:
21 residues within 4Å:
Chain B:
T.155
,
N.170
,
S.172
,
I.173
,
A.174
,
R.175
,
L.187
,
Q.192
,
H.193
,
S.226
,
S.227
,
M.228
,
P.229
,
E.236
,
E.285
,
S.317
,
P.319
,
I.330
,
K.394
Ligands:
MN.5
,
K.6
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:I.173
,
B:I.173
,
B:R.175
,
B:P.319
,
B:I.330
,
B:I.330
Hydrogen bonds:
B:I.173
,
B:I.173
,
B:R.175
,
B:Q.192
,
B:H.193
,
B:S.227
Water bridges:
B:L.187
,
B:I.194
,
B:I.194
,
B:K.394
,
B:K.394
Salt bridges:
B:H.193
,
B:K.394
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Payne, K.A. et al., New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature (2015)
Release Date
2015-06-17
Peptides
Ferulic acid decarboxylase 1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
D
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Ferulic acid decarboxylase 1
Toggle Identical (AB)
Related Entries With Identical Sequence
4s13.1
|
4s13.2
|
4s13.3
|
4s13.4
|
4zac.2
|
4zac.3
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