SMTL ID : 4zbp.2 (1 other biounit)

Crystal structure of the AMPCPR-bound AtNUDT7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x ADV: ALPHA-BETA METHYLENE ADP-RIBOSE(Non-covalent)

ADV.1: 12 residues within 4Å: Chain A: G.133, T.166, G.167, V.168, E.182, D.212, F.214, S.231, E.232 Chain B: Y.46, T.123, P.125 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Water bridges: B:D.44, B:D.44 pi-Stacking: B:Y.46, B:Y.46 Hydrogen bonds: A:V.168, A:E.182, A:D.212, A:E.232 ADV.3: 12 residues within 4Å: Chain A: Y.46, T.123, P.125 Chain B: G.133, T.166, G.167, V.168, E.182, D.212, F.214, S.231, E.232 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:V.168, B:D.212, A:T.123 Water bridges: A:D.44, A:W.82 pi-Stacking: A:Y.46, A:Y.46

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: D.58, S.59, N.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.59, A:N.91 SO4.4: 3 residues within 4Å: Chain B: D.58, S.59, N.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.59, B:N.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, Q. et al., Crystal Structures of Arabidopsis thaliana Nudix Hydrolase NUDT7 Reveal a Previously Unobserved Conformation. Mol Plant (2015)

Release Date

2015-09-09

Peptides

Nudix hydrolase 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Nudix hydrolase 7

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