- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- homo-hexamer
- Ligands
- 20 x SO4: SULFATE ION(Non-functional Binders)
- 6 x CO8: OCTANOYL-COENZYME A(Non-covalent)
CO8.4: 24 residues within 4Å:- Chain A: D.48, N.49, L.50, A.52, F.85, S.88, G.89, A.90, D.91, F.92, K.93, N.116, F.117, R.120, N.121, I.144, G.145, L.146, Y.165, P.169, L.173, E.178, F.288
- Ligands: GOL.5
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.85, A:F.117, A:F.117, A:R.120, A:L.146
- Hydrogen bonds: A:S.88, A:S.88, A:A.90, A:A.90, A:F.92, A:K.93, A:L.146
CO8.10: 11 residues within 4Å:- Chain B: D.48, N.49, L.50, A.52, F.85, S.88, A.90, D.91, F.92, K.93, I.144
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.85, B:I.144
- Hydrogen bonds: B:S.88, B:S.88, B:A.90, B:F.92, B:K.93
CO8.18: 22 residues within 4Å:- Chain C: D.48, N.49, L.50, A.52, F.85, S.88, G.89, A.90, D.91, F.92, K.93, N.116, F.117, R.120, N.121, I.144, G.145, L.146, L.173, E.178, F.288
- Ligands: GOL.20
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:F.85, C:A.90, C:F.117, C:R.120
- Hydrogen bonds: C:S.88, C:S.88, C:A.90, C:A.90, C:F.92, C:K.93, C:L.146
CO8.25: 24 residues within 4Å:- Chain D: D.48, N.49, L.50, A.52, F.85, S.88, G.89, A.90, D.91, F.92, K.93, N.116, F.117, R.120, N.121, I.144, G.145, L.146, Y.165, P.169, L.173, E.178, F.288
- Ligands: GOL.26
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:F.85, D:F.117, D:F.117, D:R.120, D:L.146
- Hydrogen bonds: D:S.88, D:S.88, D:A.90, D:A.90, D:F.92, D:K.93, D:L.146
CO8.31: 11 residues within 4Å:- Chain E: D.48, N.49, L.50, A.52, F.85, S.88, A.90, D.91, F.92, K.93, I.144
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:F.85, E:I.144
- Hydrogen bonds: E:S.88, E:S.88, E:A.90, E:F.92, E:K.93
CO8.39: 22 residues within 4Å:- Chain F: D.48, N.49, L.50, A.52, F.85, S.88, G.89, A.90, D.91, F.92, K.93, N.116, F.117, R.120, N.121, I.144, G.145, L.146, L.173, E.178, F.288
- Ligands: GOL.41
11 PLIP interactions:11 interactions with chain F- Hydrophobic interactions: F:F.85, F:A.90, F:F.117, F:R.120
- Hydrogen bonds: F:S.88, F:S.88, F:A.90, F:A.90, F:F.92, F:K.93, F:L.146
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 9 residues within 4Å:- Chain A: G.89, A.90, G.145, L.146, F.170, L.175, E.178, W.279
- Ligands: CO8.4
Ligand excluded by PLIPGOL.6: 6 residues within 4Å:- Chain A: I.129, L.153, C.154, K.188, K.257, F.264
Ligand excluded by PLIPGOL.11: 10 residues within 4Å:- Chain B: G.89, A.90, F.117, R.120, G.145, L.146, F.170, L.173, L.175, E.178
Ligand excluded by PLIPGOL.12: 7 residues within 4Å:- Chain B: I.129, L.153, D.155, K.253, K.257, F.264
- Chain C: Y.195
Ligand excluded by PLIPGOL.13: 3 residues within 4Å:- Chain A: H.260
- Chain B: H.260
- Chain C: H.260
Ligand excluded by PLIPGOL.19: 4 residues within 4Å:- Chain C: R.34, E.36, L.234, R.238
Ligand excluded by PLIPGOL.20: 9 residues within 4Å:- Chain C: G.89, A.90, F.117, G.145, L.146, F.170, L.175, E.178
- Ligands: CO8.18
Ligand excluded by PLIPGOL.21: 7 residues within 4Å:- Chain A: Y.195
- Chain C: I.129, L.153, D.155, K.253, K.257, F.264
Ligand excluded by PLIPGOL.26: 9 residues within 4Å:- Chain D: G.89, A.90, G.145, L.146, F.170, L.175, E.178, W.279
- Ligands: CO8.25
Ligand excluded by PLIPGOL.27: 6 residues within 4Å:- Chain D: I.129, L.153, C.154, K.188, K.257, F.264
Ligand excluded by PLIPGOL.32: 10 residues within 4Å:- Chain E: G.89, A.90, F.117, R.120, G.145, L.146, F.170, L.173, L.175, E.178
Ligand excluded by PLIPGOL.33: 7 residues within 4Å:- Chain E: I.129, L.153, D.155, K.253, K.257, F.264
- Chain F: Y.195
Ligand excluded by PLIPGOL.34: 3 residues within 4Å:- Chain D: H.260
- Chain E: H.260
- Chain F: H.260
Ligand excluded by PLIPGOL.40: 4 residues within 4Å:- Chain F: R.34, E.36, L.234, R.238
Ligand excluded by PLIPGOL.41: 9 residues within 4Å:- Chain F: G.89, A.90, F.117, G.145, L.146, F.170, L.175, E.178
- Ligands: CO8.39
Ligand excluded by PLIPGOL.42: 7 residues within 4Å:- Chain D: Y.195
- Chain F: I.129, L.153, D.155, K.253, K.257, F.264
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Onwukwe, G.U. et al., Structures of yeast peroxisomal Delta (3), Delta (2)-enoyl-CoA isomerase complexed with acyl-CoA substrate analogues: the importance of hydrogen-bond networks for the reactivity of the catalytic base and the oxyanion hole. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-11-11
- Peptides
- 3,2-trans-enoyl-CoA isomerase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- homo-hexamer
- Ligands
- 20 x SO4: SULFATE ION(Non-functional Binders)
- 6 x CO8: OCTANOYL-COENZYME A(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Onwukwe, G.U. et al., Structures of yeast peroxisomal Delta (3), Delta (2)-enoyl-CoA isomerase complexed with acyl-CoA substrate analogues: the importance of hydrogen-bond networks for the reactivity of the catalytic base and the oxyanion hole. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-11-11
- Peptides
- 3,2-trans-enoyl-CoA isomerase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C