SMTL ID : 4zdq.3 (5 other biounits)

Crystal Structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) from Burkholderia thailandensis complexed with CTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: T.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.147, A:T.147 ACT.2: 4 residues within 4Å: Chain A: D.105, A.106, R.177, M.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.180 ACT.3: 5 residues within 4Å: Chain A: A.17, G.84, S.86, R.87, S.90 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.87 Hydrogen bonds: A:A.17, A:S.90

1 x CAD: CACODYLIC ACID(Non-covalent)

CAD.4: 2 residues within 4Å: Chain A: D.48, G.74 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pierce, P.G. et al., Crystal structure and biophysical characterization of IspD from Burkholderia thailandensis and Mycobacterium paratuberculosis. Acta Crystallogr.,Sect.F (2024)

Release Date

2015-04-29

Peptides

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

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