SMTL ID : 4zdw.1

Crystal structure of the Rab GTPase Sec4p mutant - S29V in complex with Sec2p and GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-2-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: D.11, V.12, G.13, V.14, G.15, K.16, S.17, C.18, N.116, K.117, D.119, M.120, S.145, A.146, K.147 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:S.17, A:S.17, A:C.18, A:K.117, A:D.119, A:M.120, A:A.146, A:K.147 Water bridges: A:D.58, A:T.59 Salt bridges: A:K.16, A:D.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rinaldi, F.C. et al., New insights into the molecular mechanism of the Rab GTPase Sec4p activation. Bmc Struct.Biol. (2015)

Release Date

2015-10-14

Peptides

Ras-related protein SEC4: A
Rab guanine nucleotide exchange factor SEC2: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ras-related protein SEC4

Rab guanine nucleotide exchange factor SEC2

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