SMTL ID : 4zfb.1

Cytochrome P450 pentamutant from BM3 bound to Palmitic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: K.70, L.76, L.87, V.88, W.97, F.108, I.154, F.262, A.265, G.266, T.269, T.270, L.273, L.323, T.328, A.329, F.332, P.393, F.394, G.395, R.399, C.401, I.402, G.403, F.406, A.407 Ligands: EDO.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:V.88, A:F.108, A:I.154, A:F.262, A:F.262, A:A.265, A:L.273, A:L.323, A:F.394, A:I.402 Hydrogen bonds: A:R.399, A:R.399 Salt bridges: A:K.70, A:K.70, A:R.399 Metal complexes: A:C.401

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 15 residues within 4Å: Chain A: P.26, V.27, Y.52, A.75, V.79, A.83, V.88, Q.189, T.261, I.264, P.330, A.331, L.438, T.439 Ligands: EDO.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.27, A:A.75, A:V.79, A:A.83, A:V.88, A:I.264, A:I.264, A:T.439 Hydrogen bonds: A:Y.52, A:Q.189

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: A.265, T.269 Ligands: HEM.1, PLM.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.269

4 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 2 residues within 4Å: Chain A: D.339, E.349 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.339, A:E.349 NI.5: 3 residues within 4Å: Chain A: H.139, H.427, K.448 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.139, A:H.427 NI.6: 3 residues within 4Å: Chain A: K.211, D.215, D.218 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.215 NI.7: 2 residues within 4Å: Chain A: D.232, H.237 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.232, A:D.232, A:H.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geronimo, I. et al., Effect of Mutation and Substrate Binding on the Stability of Cytochrome P450BM3 Variants. Biochemistry (2016)

Release Date

2016-07-13

Peptides

Bifunctional P-450/NADPH-P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional P-450/NADPH-P450 reductase

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