SMTL ID : 4zfg.1

Dual-specificity Fab 5A12 in complex with Angiopoietin 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-oligomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.156, D.158, C.160, C.162 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.158, A:C.160, A:C.162, H2O.1, H2O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: K.200, Y.202, S.207, G.208 Chain C: F.28, S.30, S.31 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.208, C:S.31 Water bridges: A:F.196, A:K.200, C:L.29, C:F.32 Salt bridges: A:K.200 SO4.3: 3 residues within 4Å: Chain A: R.64, F.73, G.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.74 Water bridges: A:R.64 Salt bridges: A:R.64 SO4.4: 4 residues within 4Å: Chain A: K.131, G.132, L.133, Q.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.132, A:L.133, A:Q.145 SO4.5: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain B Water bridges: B:E.1, B:E.1, B:E.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koenig, P. et al., Deep Sequencing-guided Design of a High Affinity Dual Specificity Antibody to Target Two Angiogenic Factors in Neovascular Age-related Macular Degeneration. J.Biol.Chem. (2015)

Release Date

2015-07-01

Peptides

Angiopoietin-2: A
Fragment antigen binding 5A12 heavy chain: B
Fragment antigen binding 5A12 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Angiopoietin-2

Fragment antigen binding 5A12 heavy chain

Fragment antigen binding 5A12 light chain

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