SMTL ID : 4zfj.2 (2 other biounits)

Ergothioneine-biosynthetic Ntn hydrolase EgtC, apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain A: G.38, L.39, M.40, D.43, S.89 Chain D: Y.30, W.66 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Water bridges: D:W.66, A:D.43, A:D.43 pi-Cation interactions: D:Y.30 Hydrogen bonds: A:L.39 MES.3: 7 residues within 4Å: Chain B: G.38, L.39, M.40, D.43, S.89 Chain C: Y.30, W.66 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:L.39 Water bridges: B:D.43, B:D.43, B:A.90, C:Y.30, C:W.66 pi-Cation interactions: C:Y.30 MES.5: 7 residues within 4Å: Chain B: Y.30, W.66 Chain C: G.38, L.39, M.40, D.43, S.89 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Water bridges: B:Y.30, B:W.66, B:W.66 pi-Cation interactions: B:Y.30 Hydrogen bonds: C:L.39 MES.7: 7 residues within 4Å: Chain A: Y.30, W.66 Chain D: G.38, L.39, M.40, S.89, I.92 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain D Water bridges: A:W.66, D:D.43, D:D.43 pi-Cation interactions: A:Y.30 Hydrogen bonds: D:L.39

4 x XPE: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL(Non-covalent)

XPE.2: 18 residues within 4Å: Chain A: A.56, R.57, R.58, W.59, R.60, P.98, S.99 Chain B: G.93, M.94, S.95, I.96 Chain C: W.66, G.67, D.68, A.69, S.70, A.72, S.73 8 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A, 2 interactions with chain C Water bridges: B:G.93, B:S.95, B:I.96, C:S.70 Hydrogen bonds: A:R.58, A:R.58, A:R.60, C:S.70 XPE.4: 20 residues within 4Å: Chain A: G.93, M.94, S.95, I.96 Chain B: A.56, R.57, R.58, W.59, R.60, P.98, S.99, S.105, G.107 Chain D: W.66, G.67, D.68, A.69, S.70, A.72, S.73 7 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D, 4 interactions with chain B Water bridges: A:G.93, A:I.96 Hydrogen bonds: D:S.73, B:R.58, B:R.58, B:R.60, B:R.60 XPE.6: 17 residues within 4Å: Chain A: W.66, G.67, D.68, A.69, S.70, A.72, S.73 Chain C: R.58, W.59, R.60, P.98, S.99 Chain D: G.93, M.94, S.95, I.96, E.97 8 PLIP interactions: 3 interactions with chain D, 4 interactions with chain C, 1 interactions with chain A Water bridges: D:G.93, D:I.96, D:I.96, A:S.73 Hydrogen bonds: C:R.58, C:R.58, C:R.60, C:R.60 XPE.8: 18 residues within 4Å: Chain B: W.66, G.67, D.68, A.69, S.70, A.72, S.73 Chain C: G.93, M.94, S.95, I.96, E.97 Chain D: R.58, W.59, R.60, P.98, S.99, S.105 6 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: D:R.58, D:R.58, D:R.60, D:R.60 Water bridges: C:I.96, B:S.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vit, A. et al., Structure of the Ergothioneine-Biosynthesis Amidohydrolase EgtC. Chembiochem (2015)

Release Date

2015-07-01

Peptides

Amidohydrolase EgtC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
J

D
K

Amidohydrolase EgtC

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