SMTL ID : 4zfk.1

Ergothioneine-biosynthetic Ntn hydrolase EgtC with glutamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-tetramer

Ligands

27 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: L.19, D.20, P.21, P.22, L.26, V.27, Y.30 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: G.181, D.182, T.183, D.211 Ligand excluded by PLIP EDO.3: 8 residues within 4Å: Chain A: R.58, W.59, R.60, P.98 Chain B: A.69, S.70, S.73 Ligands: EDO.4 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: A.56, R.57, R.58, S.105, L.110 Chain B: S.73 Ligands: EDO.3 Ligand excluded by PLIP EDO.6: 9 residues within 4Å: Chain B: H.37, G.38, S.89, A.90, T.91, I.92, L.116, R.164 Ligands: GLN.16 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain B: L.19, D.20, P.21, P.22, L.26, V.27, Y.30 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain B: L.39, M.40, I.92 Chain D: Y.30, W.66 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: A.69, S.70, S.73 Chain B: R.58, W.59, R.60 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain B: W.66, G.67, D.68, A.69, A.72 Chain D: I.96 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain B: F.50, D.51, D.52, G.54, R.81, C.82, G.172 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain B: G.150, A.151, A.154, L.227, L.228, E.229, H.230 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain B: G.181, D.182, T.183, D.211, R.212 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain B: W.109, G.145, L.146, D.147, A.148 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain B: R.34, S.185, P.199, W.206, S.207, D.208 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain C: R.58, W.59, R.60 Chain D: A.69, S.70, S.73 Ligands: EDO.22 Ligand excluded by PLIP EDO.18: 9 residues within 4Å: Chain C: H.37, G.38, S.89, A.90, T.91, G.115, L.116, R.164 Ligands: GLN.25 Ligand excluded by PLIP EDO.19: 9 residues within 4Å: Chain C: L.8, G.9, G.192, V.193, V.217, R.218, D.219, A.220, H.221 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain C: L.19, D.20, P.21, P.22, L.26, V.27, Y.30 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain C: R.33, R.34, D.202 Ligand excluded by PLIP EDO.22: 8 residues within 4Å: Chain C: A.56, R.57, R.58, S.105, G.107, L.110 Chain D: S.73 Ligands: EDO.17 Ligand excluded by PLIP EDO.23: 8 residues within 4Å: Chain C: V.121, L.122, P.123, L.140, R.144, E.155, V.156, L.159 Ligand excluded by PLIP EDO.24: 4 residues within 4Å: Chain C: G.181, D.182, T.183, D.211 Ligand excluded by PLIP EDO.26: 7 residues within 4Å: Chain D: L.19, D.20, P.21, P.22, L.26, V.27, Y.30 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain C: A.69, S.70, S.73 Chain D: R.58, W.59, R.60 Ligand excluded by PLIP EDO.28: 6 residues within 4Å: Chain D: M.94, V.117, D.118, R.119, G.120, D.133 Ligand excluded by PLIP EDO.29: 5 residues within 4Å: Chain D: Q.108, W.109, G.145, L.146, D.147 Ligand excluded by PLIP EDO.30: 8 residues within 4Å: Chain C: A.77, L.78 Chain D: F.49, D.51, A.77, L.78, R.79, S.80 Ligand excluded by PLIP

4 x GLN: GLUTAMINE(Non-covalent)

GLN.5: 15 residues within 4Å: Chain A: C.2, Q.35, H.37, R.88, S.89, A.90, T.91, M.94, H.113, N.114, G.115, L.116, V.132, D.133, S.134 13 PLIP interactions: 12 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:C.2, A:S.89, A:T.91, A:T.91, A:T.91, A:N.114, A:G.115, A:S.134, Q.5 Water bridges: A:Q.35, A:S.89, A:T.91 Salt bridges: A:R.88 GLN.16: 15 residues within 4Å: Chain B: C.2, H.37, R.88, S.89, A.90, T.91, M.94, H.113, N.114, G.115, L.116, V.132, D.133, S.134 Ligands: EDO.6 11 PLIP interactions: 10 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:C.2, B:S.89, B:T.91, B:T.91, B:T.91, B:T.91, B:N.114, B:G.115, B:S.134, Q.16 Salt bridges: B:R.88 GLN.25: 16 residues within 4Å: Chain C: C.2, Q.35, H.37, R.88, S.89, A.90, T.91, M.94, H.113, N.114, G.115, L.116, V.132, D.133, S.134 Ligands: EDO.18 12 PLIP interactions: 12 interactions with chain C, Hydrogen bonds: C:C.2, C:S.89, C:T.91, C:T.91, C:T.91, C:N.114, C:G.115 Water bridges: C:Q.35, C:S.89, C:S.134, C:S.134 Salt bridges: C:R.88 GLN.31: 15 residues within 4Å: Chain D: C.2, Q.35, H.37, R.88, S.89, A.90, T.91, M.94, H.113, N.114, G.115, L.116, V.132, D.133, S.134 11 PLIP interactions: 11 interactions with chain D, Hydrogen bonds: D:C.2, D:C.2, D:T.91, D:T.91, D:T.91, D:N.114, D:G.115, D:S.134 Water bridges: D:Q.35, D:S.134 Salt bridges: D:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vit, A. et al., Structure of the Ergothioneine-Biosynthesis Amidohydrolase EgtC. Chembiochem (2015)

Release Date

2015-07-01

Peptides

Amidohydrolase EgtC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Amidohydrolase EgtC