SMTL ID : 4zfq.1

Structure of M. tuberculosis (3,3) L,D-Transpeptidase, LdtMt5. (Meropenen-adduct form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 8 residues within 4Å: Chain A: V.196, T.197, T.198, P.201, V.202, E.203, G.204, W.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.196, A:T.198 PEG.2: 6 residues within 4Å: Chain A: K.104, P.122, L.123, G.124, Y.239, Q.251 No protein-ligand interaction detected (PLIP)

1 x DWZ: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Covalent)

DWZ.3: 14 residues within 4Å: Chain A: R.297, N.298, M.316, N.318, P.319, E.328, N.337, G.338, E.339, F.340, H.342, N.358, G.359, C.360 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.337, A:G.359, A:C.360 Salt bridges: A:R.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brammer Basta, L.A. et al., Loss of a Functionally and Structurally Distinct ld-Transpeptidase, LdtMt5, Compromises Cell Wall Integrity in Mycobacterium tuberculosis. J.Biol.Chem. (2015)

Release Date

2015-09-02

Peptides

L,D-transpeptidase 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase 5

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